| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,991 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893603–3894995 | 3901987 | 6993–8385 | 11 [10] | [0] 47 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 46 (1.210) | 34/150 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901988 = | 0 (0.000) | coding (432/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
AAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAGCA > REL606/3901914‑3902063 | ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAc > 2:538239‑M2/75‑76 (MQ=255)ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAc > 1:946819‑M2/75‑76 (MQ=255) tgactccanttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAcc > 1:1159371‑M2/74‑76 (MQ=255) tgactccanttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAcc > 1:1165855‑M2/74‑76 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAcc > 1:395585‑M2/74‑76 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAcc < 1:639289‑M2/3‑1 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAcc > 2:610617‑M2/74‑76 (MQ=255) tgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttgggatcagtacaAcc < 1:64599‑M2/3‑1 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAccc < 1:584328‑M2/4‑1 (MQ=255) tgaatatcggaaacatacctatatgcctcgtgtgtaactgtccaactttttggggtcagtanaACCCGGCATGGCg > 1:1038781‑M2/64‑76 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttgggggcagtacaACCCGGCAGGGCGa > 1:233473‑M2/63‑76 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGAc < 2:1023375‑M2/15‑1 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACaa > 1:678910‑M2/60‑76 (MQ=255) tcggaatcagacctatatgcctcgtgtttaactgtccanctatttggggtcagtacaACCCGGCATGGCGACaaaa < 1:1185466‑M2/19‑1 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAAt < 1:1075227‑M2/20‑1 (MQ=255) ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAAtt > 2:588690‑M2/56‑76 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAAt < 1:409636‑M2/25‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATAc > 2:487981‑M2/50‑76 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAAAACTgg < 1:79382‑M2/30‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGga > 1:410715‑M2/46‑76 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGgaa > 1:705530‑M2/45‑76 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGgaag < 2:85418‑M2/33‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGgaag > 1:521698‑M2/44‑76 (MQ=255) tgcctcgtgtttaactgtccaacttcttcgggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGaagaag < 1:184599‑M2/36‑1 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGt < 1:968541‑M2/37‑1 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGt < 1:968532‑M2/37‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTc < 1:552928‑M2/39‑1 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAt < 2:405060‑M2/41‑1 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAt < 2:428672‑M2/41‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAtt < 2:65191‑M2/42‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTa < 1:53029‑M2/43‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACg > 2:423337‑M2/32‑76 (MQ=255) tttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACg < 1:588690‑M2/45‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACg > 1:630462‑M2/32‑76 (MQ=255) ctgtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGAt < 2:655097‑M2/50‑1 (MQ=255) gtccaactttttggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATaa > 1:805444‑M2/25‑76 (MQ=255) tccaactttttggggtcagtacaACCCGGCATGGCGACAAAAATCAATACTGGAAGAAGTTCATAACGAGGATAAg < 1:1111508‑M2/53‑1 (MQ=255) tttttgggntcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGCATAAGCGCGCa > 1:1162125‑M2/18‑76 (MQ=255) tggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTaa < 1:557808‑M2/63‑1 (MQ=255) ggggtcagtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAg < 1:473195‑M2/64‑1 (MQ=255) ggggtcactacaACCCGGCATGGCGACAAAATTCAATACNNGAAGAAGNTCATTACGAGGATAAGCGCGCAGTAAg < 1:1191010‑M2/64‑1 (MQ=255) gtcagtacaACNCGGCATGGCGACAAAATTCAATTCTGGTAGACNTTCATTACGAGGATAAGGGCGTAGTAAGGcc < 1:144282‑M2/67‑1 (MQ=255) agtacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGt > 1:431065‑M2/7‑76 (MQ=255) tacaACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCg < 2:483605‑M2/72‑1 (MQ=255) caACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAg > 2:142110‑M2/3‑76 (MQ=255) aACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAGc > 1:162720‑M2/2‑76 (MQ=255) aCCCGGCATGGCGACAAAATTCAATACTGGAAGGAGTTCATTACGAGGATAAGCGCGCAGTNAGGCCAGTCGAGCa > 1:1039426/1‑76 (MQ=255) | AAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAGCA > REL606/3901914‑3902063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |