| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,147,777 | Δ3 bp | intergenic (+72/+5) | rpoD → / ← ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3147776 | 1 (0.000) | 195 (0.810) | 98/148 | 0.5 | 99.5% | intergenic (+71/+8) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 | 3147780 = | 1 (0.000) | intergenic (+75/+4) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase | |||||
Only 100 of 196 total aligned reads displayed.
ATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147701‑3147776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > REL606/3147780‑3147853 agTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG < 2:5543181/74‑1 TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGT > 2:356685/1‑76 TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGACCTCTGCACAAACGCCACCTTTTCGGTGT > 2:7659265/1‑76 TAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCTGTGTT > 2:2950433/1‑76 AATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTT > 2:4305484/1‑76 atgGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTT < 1:6396317/73‑1 ATCGGTAGGGCGGATCAGGCGTTACGCCGCACCCGGCACTAGGGCCTCTGCACAAACGCCACCTTTTTGGTGTTTT > 2:3162195/1‑76 TCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTT < 2:6914009/76‑1 CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTT < 1:5735300/76‑1 CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTT > 2:7342840/1‑76 CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTT < 2:6201978/76‑1 GGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTA < 1:7722873/76‑1 GGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTA < 1:1383045/76‑1 GTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTAT > 2:7911162/1‑76 TAGGCCGGATCAGGCGTTACGCCGCACCCGGAACTAGGTCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATC > 2:3923640/1‑76 AGGCCGGATGAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG < 1:7406199/76‑1 AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG > 2:5187136/1‑76 AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG > 2:5886374/1‑76 AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG < 1:5849266/76‑1 GGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGC > 1:7912308/1‑76 GCCGGATCAGGCTTTTTGCCGCACCCGGCACTAGGCCCTCTGCATAAACGCCATGTTTTCGGGGTTTTTTATCGCC > 2:213722/1‑76 CCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCC < 2:7738510/76‑1 CCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCC < 2:3421047/76‑1 CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCA < 1:4176252/76‑1 CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCA > 1:4648079/1‑76 CGGATCAGGCGTTACGCCGCACCAGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCA > 2:4144544/1‑76 ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGC > 1:6770320/1‑76 ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGC < 1:2080390/76‑1 TCAGGCGTTACGCCGCACCCGGCACTAGGGCCTCTGCACAAACGCAACCTTTTCGGTGTTTTTTATCGCCCACCCA > 2:1828647/1‑76 TCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCA > 2:1016332/1‑76 caaGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCAC < 2:1709902/73‑1 CAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCAC < 1:2382348/76‑1 CAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCAC > 1:7262684/1‑76 AGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACT > 2:2875835/1‑76 GGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTA > 1:8115063/1‑76 GGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTA > 1:7999569/1‑76 GGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTA > 1:6208845/1‑76 GCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTAC < 2:3463331/76‑1 GCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTAC < 1:3997363/76‑1 GCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTAC < 2:7145912/76‑1 CGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACC > 2:7456140/1‑76 GTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCA < 1:7253101/76‑1 TTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAG > 1:2321564/1‑76 tcCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGC < 1:3439488/74‑1 TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGC < 1:7937891/76‑1 TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGC < 2:2145974/76‑1 CCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCT > 2:4644105/1‑76 ACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTC > 1:1316511/1‑76 ACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTC > 1:7538674/1‑76 CCCGGGACTTGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCC < 1:1539129/76‑1 CCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCC > 2:4440059/1‑76 CCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCC < 2:6069911/76‑1 CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG < 2:2438576/76‑1 CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG > 1:1861756/1‑76 CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG < 2:6409748/76‑1 CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG < 2:4536437/76‑1 GGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGC > 2:2575767/1‑76 CACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTC > 1:5395341/1‑76 CACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTC > 2:4090788/1‑76 CACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTC > 2:6488547/1‑76 ACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCG < 2:2106632/76‑1 CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 1:554610/1‑76 CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 1:6666356/1‑76 CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 2:5220864/1‑76 CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 2:156350/1‑76 CTAGGCCCTCGGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC < 1:259386/76‑1 TAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCG > 2:4856044/1‑76 AGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGA > 2:8163159/1‑76 gtCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGAT < 1:2208221/74‑1 GCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATA < 2:3995788/76‑1 GCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATA > 2:1328623/1‑76 CCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCGGTACCAGCGCCTGGTCCAGCTCGCGATAC < 1:7638909/76‑1 CCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACG < 2:7832228/76‑1 CTCTGCACAAACGCCCCCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGC < 1:4965792/76‑1 CTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGC > 1:3915996/1‑76 CTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTT < 2:79255/76‑1 CTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCACCGCCTGGCCCAGCTCCGGATACGCTT > 1:3769921/1‑76 GCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCA < 1:115614/76‑1 GCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCA > 1:4213110/1‑76 CACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAA < 1:4367751/76‑1 CACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAA < 2:1632341/76‑1 ACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC < 1:6872354/76‑1 ACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC < 2:3827703/76‑1 ACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC > 1:4124183/1‑76 CAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACC < 1:5019712/76‑1 AACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAG > 2:1390281/1‑76 CGCCACCTTTTCGGTG‑TTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTT > 2:4557284/1‑76 CACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCT > 2:7487444/1‑76 ACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTC > 1:4264084/1‑76 CCTTTTCGGTTTTTTTTGTCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCC < 1:2996100/76‑1 CCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCC < 2:2534597/76‑1 CCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCC > 1:242041/1‑76 TTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGT > 2:1453880/1‑76 TTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > 2:3441636/1‑76 TTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > 2:1545562/1‑76 TTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG < 1:651577/76‑1 TCGCTGTTTGTTACCGCCCCCGCACTCCCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGA < 1:2157460/76‑1 GGTGTTTTTTATCGCCCACGAACTACCAGCGCCGGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAA < 2:7012856/76‑1 TGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > 2:6528350/1‑76 TGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > 1:7077500/1‑76 ATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147701‑3147776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > REL606/3147780‑3147853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |