| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,147,777 | Δ3 bp | intergenic (+72/+5) | rpoD → / ← ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3147776 | 1 (0.000) | 195 (0.810) | 98/148 | 0.5 | 99.5% | intergenic (+71/+8) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 | 3147780 = | 1 (0.000) | intergenic (+75/+4) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase | |||||
Only 100 of 204 total aligned reads displayed.
ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCG > REL606/3147705‑3147855 | ttaatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgt > 1:4098294‑M2/76‑76 (MQ=255)ttaatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgt > 2:7456483‑M2/76‑76 (MQ=255) taatcggtaggccggatcaggcgtttcgccgcacccggaactaggccctctgcacaaacgtcaccttttcggtgtt > 2:5212385‑M2/75‑76 (MQ=255) taatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgtt < 1:5208319‑M2/2‑1 (MQ=255) taatcggtaggccggatcaggcgttacgccgcaccccgcactaggccctccgcacaaacgccaccttttcggtgtt > 1:2376862‑M2/75‑76 (MQ=255) aatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgttt > 2:3433392‑M2/74‑76 (MQ=255) atgggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgtttt < 1:6396317‑M2/4‑1 (MQ=255) tcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgttttt < 1:4136046‑M2/5‑1 (MQ=255) cggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaagcgccaccttttcggtgtttttt > 2:4123344‑M2/71‑76 (MQ=255) cggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgtttttt > 2:391386‑M2/71‑76 (MQ=255) cggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgtttttt > 1:1520308‑M2/71‑76 (MQ=255) ggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTa < 1:7722873‑M2/7‑1 (MQ=255) ggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTa < 2:6918602‑M2/7‑1 (MQ=255) taggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATc > 2:4382731‑M2/68‑76 (MQ=255) aggccggatgaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCg < 1:7406199‑M2/10‑1 (MQ=255) aggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCg > 1:3850076‑M2/67‑76 (MQ=255) aggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCg > 2:3399754‑M2/67‑76 (MQ=255) ggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGc > 1:7912308‑M2/66‑76 (MQ=255) ggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGc > 2:1632107‑M2/66‑76 (MQ=255) ggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGc > 1:2164495‑M2/66‑76 (MQ=255) gccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGcc < 1:1331885‑M2/12‑1 (MQ=255) ccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGccc < 2:3987877‑M2/13‑1 (MQ=255) cggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCa < 2:1899446‑M2/14‑1 (MQ=255) cggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCa < 2:762187‑M2/14‑1 (MQ=255) ggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCAc < 2:2568361‑M2/15‑1 (MQ=255) atcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGc > 2:6525329‑M2/60‑76 (MQ=255) atcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGc > 2:7889561‑M2/60‑76 (MQ=255) atcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGc > 1:6770320‑M2/60‑76 (MQ=255) tcaggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCa > 2:1016332‑M2/59‑76 (MQ=255) catgcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCAc < 1:2089194‑M2/19‑1 (MQ=255) caggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCAc > 1:7262684‑M2/58‑76 (MQ=255) aggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACt > 2:6470602‑M2/57‑76 (MQ=255) aggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACt > 2:462700‑M2/57‑76 (MQ=255) aggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACt > 2:6894416‑M2/57‑76 (MQ=255) ggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTa > 1:8115063‑M2/56‑76 (MQ=255) ggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTa > 1:7999569‑M2/56‑76 (MQ=255) ggcgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTa > 1:4983128‑M2/56‑76 (MQ=255) cgttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTAcc < 1:2262733‑M2/23‑1 (MQ=255) gttacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCa < 1:7253101‑M2/24‑1 (MQ=255) tccgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAgc < 1:3439488‑M2/26‑1 (MQ=255) tacgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAgc < 1:7937891‑M2/26‑1 (MQ=255) acgccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAgcg < 2:3487550‑M2/27‑1 (MQ=255) cgccgcacccggcactaggccctctgcacaaacgccaccttttcggcgTTTTTTATCGCCCACGCACTACCAgcgc > 2:2143115‑M2/49‑76 (MQ=255) ccgcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCt < 2:4892116‑M2/30‑1 (MQ=255) gcacccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTgg < 2:6267854‑M2/32‑1 (MQ=255) acccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTc > 1:7538674‑M2/43‑76 (MQ=255) ccggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa < 1:5586042‑M2/36‑1 (MQ=255) cggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg > 2:2792833‑M2/40‑76 (MQ=255) cggcactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg < 2:4536437‑M2/37‑1 (MQ=255) cactaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTc < 2:3663029‑M2/40‑1 (MQ=255) actaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcg < 2:344253‑M2/41‑1 (MQ=255) ctaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgc > 1:6666356‑M2/35‑76 (MQ=255) ctaggccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgc > 1:554610‑M2/35‑76 (MQ=255) gccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATa < 1:1875792‑M2/46‑1 (MQ=255) gccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATa > 2:1328623‑M2/31‑76 (MQ=255) ccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCGGTACCAGCGCCTGGTCCAGCTCGCGATAc < 1:7638909‑M2/47‑1 (MQ=255) ccctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 2:4455469‑M2/30‑76 (MQ=255) cctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg < 2:6051197‑M2/48‑1 (MQ=255) cctctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg < 1:4305484‑M2/48‑1 (MQ=255) tctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCt < 2:5411415‑M2/50‑1 (MQ=255) tctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCt < 1:4597264‑M2/50‑1 (MQ=255) ctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAcgcct > 2:2211125‑M2/26‑74 (MQ=255) ctgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCtt < 2:7760441‑M2/51‑1 (MQ=255) tgcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTc < 2:4276362‑M2/52‑1 (MQ=255) gcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 2:4776906‑M2/24‑76 (MQ=255) gcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 1:481067‑M2/24‑76 (MQ=255) gcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa < 2:2900231‑M2/53‑1 (MQ=255) gcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa < 1:115614‑M2/53‑1 (MQ=255) gcacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 2:7367231‑M2/24‑76 (MQ=255) gcacaaacgccaccttttcggtgTTTTTTATCGCCCACGAACTACCAGCGCCTGGTCCAGCTCGCGATAAGCTTCa > 2:4066995‑M2/24‑76 (MQ=255) cacaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCaa > 2:8129959‑M2/23‑76 (MQ=255) acaaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAc < 1:6872354‑M2/55‑1 (MQ=255) caaacgccaccttttcggtgTTTTTTATCGCCCACGCATTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAcc < 1:4187537‑M2/56‑1 (MQ=255) caaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAcc < 2:7313745‑M2/56‑1 (MQ=255) aaacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa < 2:7912308‑M2/57‑1 (MQ=255) aacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAg < 2:7131513‑M2/58‑1 (MQ=255) aacgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAg > 2:1390281‑M2/19‑76 (MQ=255) acgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGt < 1:1649455‑M2/59‑1 (MQ=255) cgccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGtt > 1:6014205‑M2/17‑76 (MQ=255) gccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGttt < 1:4218876‑M2/61‑1 (MQ=255) ccaccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTtc < 2:1679354‑M2/62‑1 (MQ=255) ccttttcggttTTTTTTGTCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTcc < 1:2996100‑M2/65‑1 (MQ=255) ccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTcc < 2:2131979‑M2/65‑1 (MQ=255) ccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTcc > 1:3955211‑M2/12‑76 (MQ=255) ccttttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTcc < 2:2957927‑M2/65‑1 (MQ=255) tttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGt > 2:1453880‑M2/9‑76 (MQ=255) tttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGt < 1:6357944‑M2/68‑1 (MQ=255) ttcggtgTTTTTTATCGCCCACGCACTCCCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTg < 1:5799404‑M2/69‑1 (MQ=255) ttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTg > 2:6103214‑M2/8‑76 (MQ=255) ttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTg > 2:1545562‑M2/8‑76 (MQ=255) ttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTg > 2:1773709‑M2/8‑76 (MQ=255) ttcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTg < 1:651577‑M2/69‑1 (MQ=255) tcggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGa < 1:2445567‑M2/70‑1 (MQ=255) cggtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGaa < 1:2403163‑M2/71‑1 (MQ=255) gtgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAAc > 2:2483283‑M2/4‑76 (MQ=255) tgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAAcg > 2:7690028‑M2/3‑76 (MQ=255) tgTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAAcg > 1:7077500‑M2/3‑76 (MQ=255) ttttttATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAAcgcg < 2:5838628/76‑1 (MQ=255) ttttttATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAAcgcg > 1:3624720/1‑76 (MQ=255) ttttttATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAAcgcg > 1:2683655/1‑76 (MQ=255) | ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCG > REL606/3147705‑3147855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |