| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4603902 | 455 (1.860) | 9 (0.040) | 3/146 | 18.8 | 2.4% | intergenic (+408/+12) | yjjV/yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| ? | REL606 | = 4621379 | 289 (1.210) | intergenic (+80/+5) | trpR/yjjX | Trp operon repressor/NTPase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4603827‑4603902‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < REL606/4621379‑4621305 CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTCGGCCG > 2:3235064/1‑76CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG > 2:758773/1‑76CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG > 2:1203909/1‑76CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG > 2:7503860/1‑76CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG > 2:609923/1‑76CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG < 1:7262498/76‑1CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG > 2:4424456/1‑76CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCC < 1:1649479/75‑1CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGCCCG > 2:3732453/1‑76 AGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCC < 1:4884530/74‑1 CACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCC < 1:3496814/66‑1 CTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCC < 1:1149374/58‑1 ATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCC < 1:5668404/55‑1 CGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG < 2:7572205/53‑1 GCTTGTCGCGTCTTATCAGGCCTACAGTTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATNNNNCA < 2:2909522/76‑1 GCTTGACGCGTCTTACAATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA < 2:2577479/76‑1 CTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCC < 2:5501176/47‑1 CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA < 2:6407229/41‑1 GAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:1322395/39‑1 GAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:5577238/39‑1 GAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:2259049/39‑1 tGTAGCCCGGATAGGGGGTTCACGCCCCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTAT < 2:2801621/75‑1 gGGCCGGATAGGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAG < 2:6497924/75‑1 GCCGGAAAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGC < 2:389896/76‑1 gCGGATAAGGCGTTTACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCC < 2:2009436/75‑1 gGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT < 2:489556/75‑1 CGGATAGGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT < 2:1163151/76‑1 CGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT > 1:1803589/1‑76 CGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT < 1:1630215/76‑1 CGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT < 2:4192743/76‑1 CGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT > 2:6083398/1‑76 CGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT < 2:7105016/76‑1 CGGATAAGGCGTCCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT < 2:2090536/76‑1 CGGATAAGCCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT < 2:826798/76‑1 GGATAGGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 2:3643604/76‑1 GGATAGGGCGTTCACGCCCCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 2:2538738/76‑1 GGATAAGGCGTTCGCGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 2:3614709/76‑1 GGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTA > 2:3740684/1‑76 GGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA > 2:2307326/1‑76 GGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 2:933447/76‑1 GGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 1:2893041/76‑1 GGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 1:6688791/76‑1 GGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 2:3334614/76‑1 GGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA > 2:1575845/1‑76 GGATAAGCCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 1:2108484/76‑1 GGATAAGCCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < 2:5713090/76‑1 CAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4603827‑4603902‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA < REL606/4621379‑4621305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |