| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4603902 | 455 (1.860) | 9 (0.040) | 3/146 | 18.8 | 2.4% | intergenic (+408/+12) | yjjV/yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| ? | REL606 | = 4621379 | 289 (1.210) | intergenic (+80/+5) | trpR/yjjX | Trp operon repressor/NTPase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 320 total aligned reads displayed.
GTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGG > REL606/4621304‑4621454 | gTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCCTATc > 1:7628305/1‑76 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGGCTTATcc > 2:5713090/1‑76 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc > 1:6688791/1‑76 (MQ=255) tAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc > 1:2893041/1‑76 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGGACGCCTTATCCg > 2:2090536/1‑76 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGGCTTATCCg > 2:826798/1‑76 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATccc > 2:489556/1‑75 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCg > 2:4192743/1‑76 (MQ=255) aGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCg < 1:1803589/76‑1 (MQ=255) ggCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt > 2:6089988/1‑76 (MQ=255) ggCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAAAGGCTTCTCCGt > 2:3757846/1‑76 (MQ=17) gCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTc < 2:4697268/76‑1 (MQ=255) cTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTCTCCGTCCt > 2:1842788/1‑76 (MQ=255) cTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCt < 2:450523/76‑1 (MQ=255) cTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCt < 2:5538309/76‑1 (MQ=255) cTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCCTATCCGTCCt > 1:79013/1‑76 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTccca > 2:2576356/1‑74 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa > 2:7033976/1‑76 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa < 1:4884868/76‑1 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa > 2:897105/1‑76 (MQ=255) tGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTa < 2:193907/76‑1 (MQ=255) gATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTAc > 2:817470/1‑76 (MQ=255) gATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTAc < 2:4628491/76‑1 (MQ=255) aTAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGGGGCGTGAACCCCCTATCCGGGCTACa > 2:2801621/1‑76 (MQ=14) aTAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCcaca > 2:791147/1‑76 (MQ=255) aTAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACa > 1:2099909/1‑76 (MQ=255) tAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACaa > 1:6094532/1‑76 (MQ=255) tAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGAACGCCTTATCCGTCCTACaa > 2:6919525/1‑76 (MQ=255) aaGACTCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAt > 1:4577782/1‑76 (MQ=255) aaGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAt > 2:1312513/1‑76 (MQ=255) aaGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAt < 1:1170763/76‑1 (MQ=255) aaGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAt > 2:3108995/1‑76 (MQ=255) aaGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAt > 2:4171250/1‑76 (MQ=255) gACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTCCaactc > 2:1103822/1‑73 (MQ=255) aCGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGcc < 2:3652912/76‑1 (MQ=255) cgcgGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCCTCCTACAATGCCt > 1:5189784/1‑76 (MQ=255) gcgGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGGGGCGTGAACCCCTTATCCGTCCTACAATGCCTg > 1:3433226/1‑76 (MQ=255) gcgGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTg < 2:540219/76‑1 (MQ=255) ggCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGat < 1:5093852/76‑1 (MQ=255) cAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGatat < 1:1287436/76‑1 (MQ=255) cAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGatat < 1:7016994/76‑1 (MQ=255) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAtata < 2:1546700/76‑1 (MQ=255) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAtata > 1:5742021/1‑76 (MQ=255) aGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAtata < 1:2734516/76‑1 (MQ=255) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACg > 1:95414/1‑76 (MQ=255) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACg < 2:2041403/76‑1 (MQ=255) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACg < 2:6298885/76‑1 (MQ=255) cGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACCCCTTATCCGTCCTACAATGCCTGATATACg > 1:2168597/1‑76 (MQ=255) cGTAGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAtataag > 2:7801808/1‑74 (MQ=255) tcccATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGc < 1:837110/73‑1 (MQ=255) cGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATCAACggga > 2:3833561/1‑74 (MQ=17) gCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCAt > 2:6453751/1‑76 (MQ=255) gCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCAt > 2:7413518/1‑76 (MQ=255) cATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCAtt > 2:7725893/1‑76 (MQ=255) aTCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtg > 2:2534331/1‑76 (MQ=255) tCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAGCGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgt < 1:5931144/76‑1 (MQ=255) tCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgt < 1:3852042/76‑1 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg < 2:6588743/76‑1 (MQ=255) cAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATtgtg < 1:4155777/76‑1 (MQ=255) aTCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACg > 2:716917/1‑76 (MQ=255) aTCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACg < 1:4098971/76‑1 (MQ=255) aTCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACg < 2:4298497/76‑1 (MQ=255) tGCACCGAATGCCGGATGCGGCGTGAGCGCCTTATCCGTCCTACAATGCCTGATATACTGCATTGTGAAACGGACt > 1:1888046/1‑76 (MQ=255) tGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACt < 2:269142/76‑1 (MQ=255) gCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTc < 1:4672270/76‑1 (MQ=255) cACCGAATGCCGGATGCGGAGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCa > 1:3802692/1‑76 (MQ=255) ccGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAgc < 2:2347375/76‑1 (MQ=255) aaTGCCGGAGGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGcccc < 2:4431737/76‑1 (MQ=255) gCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAgg > 1:3268168/1‑76 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGACCTACAATGCCTGATATACGGCATTGTGATACGGAGTCAGGGCCAggggc > 2:1990671/1‑73 (MQ=25) gATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCa < 2:2845330/76‑1 (MQ=255) aTGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCAc > 2:3303461/1‑76 (MQ=255) tGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCAcc < 1:6536310/76‑1 (MQ=255) gcggcgTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCAccc > 2:4646484/1‑75 (MQ=255) gcgTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCt > 1:5332998/1‑76 (MQ=255) tGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGt > 1:50341/1‑76 (MQ=255) gAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTg > 1:4479310/1‑76 (MQ=255) gAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTg < 2:2978661/76‑1 (MQ=255) aCGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGAt < 2:3551959/76‑1 (MQ=255) aCGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGAt < 1:2534331/76‑1 (MQ=255) cGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATa > 1:4332371/1‑76 (MQ=255) cGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGCGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATa > 2:4032356/1‑76 (MQ=255) gtcTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAg < 2:6063241/74‑1 (MQ=255) gCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAg < 2:7128115/76‑1 (MQ=255) ccTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGa < 2:3987123/76‑1 (MQ=255) cTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGAc > 1:2361739/1‑76 (MQ=255) ttATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACg > 2:6819647/1‑76 (MQ=255) ttATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACg > 1:622202/1‑76 (MQ=255) ttATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACg > 2:3191646/1‑76 (MQ=255) tATCCGTCCTACAATGCCTGATATCCGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGaggt > 2:7763479/1‑73 (MQ=255) tATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGc > 2:3424426/1‑76 (MQ=255) tATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGc > 1:6571498/1‑76 (MQ=255) tATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGc > 2:4241781/1‑76 (MQ=255) tATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGc > 2:1698271/1‑76 (MQ=255) aTCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCt > 2:5847550/1‑76 (MQ=255) aTCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCt > 2:7834414/1‑76 (MQ=255) tCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTg > 1:6416261/1‑76 (MQ=255) tCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTg > 2:117117/1‑76 (MQ=255) gccGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTg < 2:7563453/75‑1 (MQ=255) ccGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTgg > 1:5864520/1‑76 (MQ=255) | GTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTGG > REL606/4621304‑4621454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |