| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2042218 = | 293 (1.200) | 5 (0.020) | 4/134 | 17.4 | 1.9% | coding (603/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2042455 = | 257 (1.180) | coding (366/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 296 total aligned reads displayed.
ATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAAC > REL606/2042143‑2042293 | atTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCa > 1:5818781/1‑76 (MQ=255)atTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCa > 1:1454979/1‑76 (MQ=255) tttGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCAt < 2:2230330/76‑1 (MQ=255) ttGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATa > 1:6070414/1‑76 (MQ=255) ttGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATa < 2:6880285/76‑1 (MQ=255) ttGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATa < 1:7582368/76‑1 (MQ=255) tGAATAAAAATCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAg < 2:4084883/76‑1 (MQ=255) tGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAg > 1:5190868/1‑76 (MQ=255) gAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGc > 1:7127568/1‑76 (MQ=255) gAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGc > 2:1421724/1‑76 (MQ=255) aaTAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCa < 2:895954/76‑1 (MQ=255) aTAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCaa < 1:4079584/76‑1 (MQ=255) aTAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCaa > 1:2965570/1‑76 (MQ=255) tAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCaaa > 2:2472735/1‑76 (MQ=255) tAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCaaa < 1:5369212/76‑1 (MQ=255) aaaaaGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCaaaa < 1:4185495/76‑1 (MQ=255) aaaGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAAtt < 1:1756732/76‑1 (MQ=255) cTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTtctc > 1:692759/1‑76 (MQ=255) cTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTtctc < 1:1986397/76‑1 (MQ=255) ttCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTctct > 2:4878628/1‑76 (MQ=255) tCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCtt < 2:7288278/76‑1 (MQ=255) tCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCtt > 2:3205032/1‑76 (MQ=255) cAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCttt > 1:7307916/1‑76 (MQ=255) tACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGa > 2:4390996/1‑76 (MQ=255) tACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGa > 1:4682458/1‑76 (MQ=255) tACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGa > 1:2486206/1‑76 (MQ=255) aCTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGAt > 1:3859160/1‑76 (MQ=255) aCTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGAt > 2:4542952/1‑76 (MQ=255) aCTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGAt < 2:4148640/76‑1 (MQ=255) aCTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGAt > 1:6525047/1‑76 (MQ=255) cTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATa < 2:1676956/76‑1 (MQ=255) cAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCa < 2:6627056/76‑1 (MQ=255) aGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCAt < 1:7778889/76‑1 (MQ=255) aGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCAt < 1:3612439/76‑1 (MQ=255) aGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCAt < 1:1342557/76‑1 (MQ=255) cAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATgg > 2:5937324/1‑76 (MQ=255) aaTTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGa < 2:5187502/76‑1 (MQ=255) aaTTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGa > 1:1135161/1‑76 (MQ=255) ttAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGAtt > 2:6976519/1‑76 (MQ=255) atAGTAAGGTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGAtt < 2:7998920/75‑1 (MQ=255) tAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATta > 1:5643853/1‑76 (MQ=255) tAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATta > 2:6327138/1‑76 (MQ=255) aGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATtat < 2:3928629/76‑1 (MQ=255) gTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATtata > 1:4809665/1‑76 (MQ=255) gTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATtata > 2:5028128/1‑76 (MQ=255) tAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATaa > 1:4448791/1‑76 (MQ=255) tAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATaa > 2:6415441/1‑76 (MQ=255) aaGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATaaa > 1:93604/1‑76 (MQ=255) ttACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAatat > 1:3428824/1‑76 (MQ=255) aCTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTc > 2:1327557/1‑76 (MQ=255) aCTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTc < 1:2341216/76‑1 (MQ=255) aCTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTc > 1:6377410/1‑76 (MQ=255) cTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCa > 1:6805018/1‑76 (MQ=255) gCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGt < 2:3062272/76‑1 (MQ=255) gCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGt < 2:2342482/76‑1 (MQ=255) gCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGt > 1:2714964/1‑76 (MQ=255) cTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGta > 1:977725/1‑76 (MQ=255) cTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGta > 2:1927701/1‑76 (MQ=255) cTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGta > 2:7678292/1‑76 (MQ=255) tAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtac > 1:7679555/1‑76 (MQ=255) tAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtac < 2:2746963/76‑1 (MQ=255) aaaTGAAAATAGCTTTTTTAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtaca < 2:3325413/76‑1 (MQ=255) aaaTGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtaca < 2:7468326/76‑1 (MQ=255) aaaTGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtaca > 1:8154661/1‑76 (MQ=255) aaTGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaa < 2:4049388/76‑1 (MQ=255) aTGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaat < 1:4286990/76‑1 (MQ=255) gAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaatac > 1:3788115/1‑76 (MQ=255) aaaaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaataca > 1:1848808/1‑76 (MQ=255) tAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAAttt > 2:4482000/1‑76 (MQ=255) tAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTATGGGATACCATGGATTATAAATATTCAGTACAATACCAttt > 2:575780/1‑76 (MQ=255) gCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTAt < 1:2194611/76‑1 (MQ=255) gCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTAt < 1:1059711/76‑1 (MQ=255) cTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATg > 2:3714331/1‑76 (MQ=255) tttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGa > 2:772893/1‑76 (MQ=255) tttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGa > 1:7516717/1‑76 (MQ=255) tttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGa > 2:6075460/1‑76 (MQ=255) ttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGacac > 2:1253687/1‑76 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt > 1:2903741/1‑76 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt > 1:6675475/1‑76 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt < 2:3381382/76‑1 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt < 1:2550737/76‑1 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt > 1:1284580/1‑76 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt > 1:3275126/1‑76 (MQ=255) gAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACta > 1:3601616/1‑76 (MQ=255) gAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACta < 2:3765020/76‑1 (MQ=255) aaTGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtat > 2:6525053/1‑76 (MQ=255) aaTATTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtat > 1:159780/1‑76 (MQ=255) aTGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtata > 1:793084/1‑76 (MQ=255) aTGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtata > 1:2797658/1‑76 (MQ=255) tGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAg < 2:255755/76‑1 (MQ=255) tGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAg > 2:4716466/1‑76 (MQ=255) gTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAgg > 1:2075912/1‑76 (MQ=255) gTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAgg > 1:7851603/1‑76 (MQ=255) gTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAgg > 1:642990/1‑76 (MQ=255) tCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATa < 2:285982/76‑1 (MQ=255) tCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATa < 2:7345874/76‑1 (MQ=255) tCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATa < 1:3114605/76‑1 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa > 2:5401949/1‑76 (MQ=255) aTAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAAc < 2:6782179/76‑1 (MQ=255) aTAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAAc < 1:4500414/76‑1 (MQ=255) | ATTTGAATAAAAAGCTTCAAGTACTCCAGCAATTAGTAAGTTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAAC > REL606/2042143‑2042293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |