| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,843,787 | Δ54 bp | coding (251‑304/1404 nt) | dnaA ← | chromosomal replication initiation protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3843787 | 3843840 | 54 | 134 [6] | [1] 131 | dnaA | chromosomal replication initiation protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3843786 | 6 (0.040) | 104 (0.790) | 58/132 | 0.8 | 97.1% | coding (305/1404 nt) | dnaA | chromosomal replication initiation protein |
| ? | REL606 | 3843841 = | 1 (0.010) | coding (250/1404 nt) | dnaA | chromosomal replication initiation protein | |||||
Only 100 of 142 total aligned reads displayed.
AACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3843703‑3843786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttgcgTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGA > REL606/3843841‑3843915 AACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTG < 1:4174603/76‑1 ACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCTACCTGAGCGCGTAAAAGAAGCAGCACGTTGCGGCTGt > 2:5020480/1‑75 ACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGC > 1:287295/1‑76 TAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTT < 1:4784178/76‑1 TAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTT < 1:50662/76‑1 TAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTT > 2:205062/1‑76 AGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTG > 1:2007811/1‑76 GGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGC < 2:28130/76‑1 GGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGC < 2:4999435/76‑1 GGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA < 1:45225/76‑1 GGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCA > 2:3266834/1‑76 GGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCCTCA > 2:3148762/1‑76 TCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCGCCG > 1:873730/1‑76 TGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGGCACCGGg > 2:2195819/1‑75 CCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCCGTTT > 2:3868152/1‑76 CGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGTCACCGGGTTG > 2:3099508/1‑76 CGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGGCACCGGGTTG > 1:680586/1‑76 GGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGGCACCGGGTTGGTG > 2:2285561/1‑76 CCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCC < 2:1812929/76‑1 CGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCG < 1:3920432/76‑1 GGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTTCGTCACCCGTTTGGTGCCGA > 2:485994/1‑76 GACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACT < 2:4674863/76‑1 ACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTT < 1:257148/76‑1 TTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAA < 1:3574321/76‑1 TTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAA < 1:1229682/76‑1 TTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGGGCCGACTTCca > 2:3839219/1‑74 TATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTTGGGCCGACTTCAAA > 2:3378772/1‑76 TATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAA < 2:2270455/76‑1 TATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAA < 2:4970194/76‑1 TATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGGTTGGTGCCGACTTCAAA > 1:4285616/1‑76 TATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCCGTTTGGTGCCGACTTCAAA > 2:3157493/1‑76 CCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAAac > 1:2303152/1‑74 CCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGC < 2:421080/76‑1 CCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGC < 2:4326155/76‑1 CAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCA < 1:3833904/76‑1 ACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGC < 1:4153552/76‑1 CTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAAAGCCGCTG > 1:990050/1‑76 TGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGT < 2:4434285/76‑1 TGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCCTTTGCGTCACCGGGTTGGTGGCGGCTTCAAAAAGCAGCTtt > 1:2895301/1‑74 GCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGGTTGGTGCCGACTTCAAAACGCAGCTGTGGG > 2:1528057/1‑76 CGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGG < 1:21983/76‑1 CGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCCGTTTGGTGCCGGCTTCAAAACGCAGCTGGGGGG > 2:1324436/1‑76 GCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCCGCTGTGGGGC > 1:611490/1‑76 GCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGGGCCGACTTCAAAACGCAGCTGTGGGGC > 1:4935781/1‑76 CGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGga > 2:4475887/1‑74 CGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCA < 2:120504/76‑1 CGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCA < 2:3652960/76‑1 GTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCAT > 1:2387975/1‑76 AGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCC > 2:2466533/1‑76 AGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCC > 1:3931131/1‑76 AGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGGTTGGTGCAGCCTTCAAAAAGCCACTGTCGGGCATCC > 2:4426222/1‑76 GAAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCG < 2:3176776/76‑1 AAGGCGCAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAAAGCAGCTGTGGGGCATCCGC > 1:4687254/1‑76 GCGCAGCACGTTGCGGCTGCGTTTGCGTCCCCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCC < 2:1300147/76‑1 CAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCA > 2:1970344/1‑76 CAGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAAAGCAGCTGTGGGGGATCCGCTCCGCA > 2:3552728/1‑76 AGCACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAG < 2:2319116/76‑1 ccCGTGGCGTCTGCGTTTGCGTCACCGGTTTTGTGCCGACTTCAAAACGCAGCTGTGGGTCATCCGCTCCACAGAA < 1:3339471/74‑1 CACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAA > 2:2570851/1‑76 CACGTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAA < 2:1231616/76‑1 GTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGCCTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACT < 1:2982340/76‑1 GTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACT < 2:1823717/76‑1 GTTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCCGTGGGGGATCCGCTCCCCAGAAAac > 2:2786208/1‑74 TTGCGGCTGCGTTTGCGTCCCCGGTTTGGTGCCGACTTCAAAACGCAGCCGTGGGGGATCCCCTCCGCCGAAACTG > 2:3864564/1‑76 TTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTG > 2:4159024/1‑76 TTGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTG < 2:626901/76‑1 TTGCGGCTGCGTTTGCGTCACCGGTTTGGGGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTG < 2:2570422/76‑1 TGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCCGCTGTGGGGCATCCGCTCCGCAGAAACTGG > 2:4968005/1‑76 TGCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAAAGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGG > 2:490484/1‑76 GCGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGT < 2:784260/76‑1 GCGGCTGCGTTTGCGTCACCCGTTTGGTGCCGACTTCAAAACGCAGCCGTGGGGCATCCGCTCCGCAGAAACTGGT > 2:3377109/1‑76 gGGCTGCGTTTGCGTCACGGGTTTGGTGCCTCCTTCAAAACGCAGCTGTGGGGCATCCTCTCCGCAGAAACTGGTT < 2:3292163/75‑1 CGGCTGCGTTTGCGTCACTGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 2:1558114/76‑1 CGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 1:10445/76‑1 CGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 2:4461429/76‑1 CGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 2:4142648/76‑1 CGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT > 2:434401/1‑76 CGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 1:5014376/76‑1 CGGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTT < 2:626625/76‑1 GGCTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTA < 1:875905/76‑1 CTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGC < 2:4897598/76‑1 CTGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGC > 2:1578517/1‑76 GCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAG > 2:4816099/1‑76 GCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAG > 2:76724/1‑76 GCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAG > 2:3515254/1‑76 ggTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTC < 1:1357476/74‑1 GTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTC > 2:3566674/1‑76 GTTTGCGGCACCGGTTTGGTGCCGCCTGCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTC < 1:3744432/76‑1 GTTGGCGTCACCGGTTTGGTCCCAACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTC < 1:1080502/76‑1 TTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCC > 1:3499091/1‑76 TTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCC < 1:2012769/76‑1 TTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTCGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCC > 2:3132042/1‑76 TTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCA < 1:1489399/76‑1 TTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCA < 2:2229001/76‑1 TGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCAT > 2:4813021/1‑76 TGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCAT > 2:4989400/1‑76 CGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTG < 1:2183730/76‑1 CGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTG < 1:1995236/76‑1 CGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTG < 1:45012/76‑1 GTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGA < 1:3891237/76‑1 AACGATAGGTCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3843703‑3843786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtttgcgTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGA > REL606/3843841‑3843915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |