Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 3,843,787 Δ54 bp coding (251‑304/1404 nt) dnaA ← chromosomal replication initiation protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3843787 3843840 54 134 [6] [1] 131 dnaA chromosomal replication initiation protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 38437866 (0.040)104 (0.790) 58/132 0.8 97.1% coding (305/1404 nt) dnaA chromosomal replication initiation protein
?REL606 3843841 = 1 (0.010)coding (250/1404 nt) dnaA chromosomal replication initiation protein

Only 100 of 134 total aligned reads displayed.

TCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTT  >  REL606/3843712‑3843861
                                                                          |                                                                           
  ggTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtca                                                                          >  2:3266834‑M1/1‑73 (MQ=255)
  ggTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtca                                                                          <  1:45225‑M1/76‑4 (MQ=255)
  ggTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCCtca                                                                          >  2:3148762‑M1/1‑73 (MQ=255)
       tGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGgcaccggg                                                                     >  2:2195819‑M1/1‑68 (MQ=255)
        gccggggccgggACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtt                                                                    >  2:2578222‑M1/1‑67 (MQ=255)
          cggggccgggACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGgcaccgggttg                                                                  >  1:680586‑M1/1‑65 (MQ=255)
             ggccgggACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGgcaccgggttggtg                                                               >  2:2285561‑M1/1‑62 (MQ=255)
               ccgggACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgcc                                                             <  2:1812929‑M1/76‑17 (MQ=255)
                cgggACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccg                                                            <  1:3920432‑M1/76‑18 (MQ=255)
                   gACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgact                                                         <  2:4674863‑M1/76‑21 (MQ=255)
                    aCGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgactt                                                        <  1:257148‑M1/76‑22 (MQ=255)
                       ttATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaa                                                     <  1:1229682‑M1/76‑25 (MQ=255)
                       ttATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggggccgacttcca                                                     >  2:3839219‑M1/1‑52 (MQ=255)
                       ttATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggggccgacttcaa                                                     >  1:1295502‑M1/1‑52 (MQ=255)
                        tATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggttttgggccgacttcaaa                                                    >  2:3378772‑M1/1‑51 (MQ=255)
                        tATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaa                                                    <  2:4970194‑M1/76‑26 (MQ=255)
                        tATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaa                                                    <  2:2270455‑M1/76‑26 (MQ=255)
                        tATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccgggttggtgccgacttcaaa                                                    >  1:4285616‑M1/1‑51 (MQ=255)
                         aTCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaa                                                   >  1:4325581‑M1/1‑50 (MQ=255)
                         aTCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGtcaccggtttgggggcgacttcaaaa                                                   >  2:3570353‑M1/1‑50 (MQ=255)
                           cccAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaaac                                                 >  1:2303152‑M1/1‑48 (MQ=255)
                            ccAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgc                                                <  2:1438538‑M1/76‑30 (MQ=255)
                            ccAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgc                                                <  2:4326155‑M1/76‑30 (MQ=255)
                            ccAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgc                                                <  2:4983589‑M1/76‑30 (MQ=255)
                            ccAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTc                                                <  1:4636519/76‑1 (MQ=255)
                             cAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgca                                               <  1:3833904‑M1/76‑31 (MQ=255)
                             cAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgca                                               >  1:3800978‑M1/1‑46 (MQ=255)
                               aCCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagc                                             <  1:4153552‑M1/76‑33 (MQ=255)
                               aCCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagc                                             <  1:2233248‑M1/76‑33 (MQ=255)
                                 cTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctg                                           <  2:2275454‑M1/76‑35 (MQ=255)
                                 cTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaaagccgctg                                           >  1:990050‑M1/1‑42 (MQ=255)
                                 cTGAGCGAGTAGAAGGCGCAGCGCGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctg                                           <  2:4280404‑M1/76‑35 (MQ=255)
                                  tGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgt                                          <  2:4434285‑M1/76‑36 (MQ=255)
                                  tGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCCTTTGCGtcaccgggttggtggcggcttcaaaaagcagcttt                                          >  1:2895301‑M1/1‑41 (MQ=255)
                                   gAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGGTTGCGgcaccggtttggtgccgacttcaaaaagcagctgtg                                         >  2:3307450‑M1/1‑40 (MQ=255)
                                      cgcgTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtgggg                                      <  1:21983‑M1/76‑40 (MQ=255)
                                      cgcgTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcacccgtttggtgccggcttcaaaacgcagctgggggg                                      >  2:1324436‑M1/1‑37 (MQ=255)
                                       gcgTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgccgctgtggggc                                     >  1:611490‑M1/1‑36 (MQ=255)
                                       gcgTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggggccgacttcaaaacgcagctgtggggc                                     >  1:4935781‑M1/1‑36 (MQ=255)
                                        cgTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggca                                    <  2:3652960‑M1/76‑42 (MQ=255)
                                        cgTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggca                                    <  2:120504‑M1/76‑42 (MQ=255)
                                         gTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCtt                                   <  1:998511/76‑1 (MQ=255)
                                           aGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggttttgggccgacttcaaaacgcagctgtggggcaacc                                 >  2:3143023‑M1/1‑32 (MQ=255)
                                           aGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatcc                                 >  2:2466533‑M1/1‑32 (MQ=255)
                                           aGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatcc                                 >  1:3931131‑M1/1‑32 (MQ=255)
                                            gAAGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccg                                <  2:3176776‑M1/76‑46 (MQ=255)
                                             aaGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgc                               >  2:2360089‑M1/1‑30 (MQ=255)
                                             aaGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggggccgacttcaaaacgcagctgtggggcatccgc                               >  2:3080267‑M1/1‑30 (MQ=255)
                                              aGGCGCAGCACGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgct                              <  1:3917856‑M1/76‑48 (MQ=255)
                                                gcgcAGCACGTTGCGGCTGCGTTTGCGtccccggtttggtgccgacttcaaaacgcagctgtggggcatccgctcc                            <  2:1300147‑M1/76‑50 (MQ=255)
                                                  gcagcaCGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgc                          <  2:611013‑M1/76‑52 (MQ=255)
                                                   cagcgCGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgca                         <  2:3186541‑M1/76‑53 (MQ=255)
                                                   cagcaCGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgca                         >  2:1970344‑M1/1‑24 (MQ=255)
                                                   cagcaCGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaaagcagctgtgggggatccgctccgca                         >  2:3552728‑M1/1‑24 (MQ=255)
                                                      cccgtGGCGTCTGCGTTTGCGtcaccggttttgtgccgacttcaaaacgcagctgtgggtcatccgctccacagaa                      <  1:3339471‑M1/74‑56 (MQ=255)
                                                      caCGTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaa                      <  2:1231616‑M1/76‑56 (MQ=255)
                                                         gTTGCGGCTGCGTTTTCGtcaccggtttggcgccgacttcaaaacgcagctgtggggcagccgctccgcagaaact                   >  2:1176562‑M1/1‑18 (MQ=255)
                                                         gTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaact                   <  2:1823717‑M1/76‑59 (MQ=255)
                                                         gTTGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagccgtgggggatccgctccccagaaaac                   >  2:2786208‑M1/1‑18 (MQ=255)
                                                          ttGCGGCTGCGTTTGCGtccccggtttggtgccgacttcaaaacgcagccgtgggggatcccctccgccgaaactg                  >  2:3864564‑M1/1‑17 (MQ=255)
                                                          ttGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactg                  >  2:4159024‑M1/1‑17 (MQ=255)
                                                          ttGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactg                  <  2:626901‑M1/76‑60 (MQ=255)
                                                          ttGCGGCTGCGTTTGCGtcaccggtttggggccgacttcaaaacgcagctgtggggcatccgctccgcagaaactg                  <  2:2570422‑M1/76‑60 (MQ=255)
                                                           tGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgccgctgtggggcatccgctccgcagaaactgg                 >  2:4968005‑M1/1‑16 (MQ=255)
                                                           tGCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaaagcagctgtggggcatccgctccgcagaaactgg                 >  2:490484‑M1/1‑16 (MQ=255)
                                                            gCGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggt                <  2:784260‑M1/76‑62 (MQ=255)
                                                            gCGGCTGCGTTTGCGtcacccgtttggtgccgacttcaaaacgcagccgtggggcatccgctccgcagaaactggt                >  2:3377109‑M1/1‑15 (MQ=255)
                                                             cGGCTGCGTTTGCGtcactggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               <  2:1558114‑M1/76‑63 (MQ=255)
                                                             cGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               <  1:10445‑M1/76‑63 (MQ=255)
                                                             cGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               <  2:626625‑M1/76‑63 (MQ=255)
                                                             cGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               <  1:5014376‑M1/76‑63 (MQ=255)
                                                             cGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               <  1:4878536‑M1/76‑63 (MQ=255)
                                                             cGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               <  2:4142648‑M1/76‑63 (MQ=255)
                                                             cGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               <  2:4461429‑M1/76‑63 (MQ=255)
                                                             cGGCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtt               >  2:434401‑M1/1‑14 (MQ=255)
                                                              gtctgCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtta              <  2:161860‑M1/74‑64 (MQ=255)
                                                              ggCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtta              <  1:2035264‑M1/76‑64 (MQ=255)
                                                              ggCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggtta              <  1:875905‑M1/76‑64 (MQ=255)
                                                               gCTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttag             <  1:4555241‑M1/76‑65 (MQ=255)
                                                                cTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagc            <  1:3377261‑M1/76‑66 (MQ=255)
                                                                cTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagc            <  2:4897598‑M1/76‑66 (MQ=255)
                                                                cTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagc            >  1:2955919‑M1/1‑11 (MQ=255)
                                                                cTGCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagc            >  2:1578517‑M1/1‑11 (MQ=255)
                                                                  gCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcag          >  2:2145005‑M1/1‑9 (MQ=255)
                                                                  gCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcag          >  2:76724‑M1/1‑9 (MQ=255)
                                                                  gCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcag          >  2:4463340‑M1/1‑9 (MQ=255)
                                                                  gCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcag          >  2:4816099‑M1/1‑9 (MQ=255)
                                                                  gCGTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctcagcagaaactggttagcag          >  2:4868550‑M1/1‑9 (MQ=255)
                                                                    ggttgcGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtc        <  1:1357476‑M1/74‑70 (MQ=255)
                                                                    gTTTGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtc        >  2:3566674‑M1/1‑7 (MQ=255)
                                                                    gTTTGCGgcaccggtttggtgccgcctgcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtc        <  1:3744432‑M1/76‑70 (MQ=255)
                                                                    gTTGGCGtcaccggtttggtcccaacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtc        <  1:1080502‑M1/76‑70 (MQ=255)
                                                                     tttGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtcc       >  1:3499091‑M1/1‑6 (MQ=255)
                                                                     tttGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtcc       <  1:2012769‑M1/76‑71 (MQ=255)
                                                                     tttGCGtcaccggtttggtgccgacttcaaaacgcagctgtcgggcatccgctccgcagaaactggttagcagtcc       >  2:3132042‑M1/1‑6 (MQ=255)
                                                                      ttGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtcca      <  1:1489399‑M1/76‑72 (MQ=255)
                                                                       tGCGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtccat     >  2:4813021‑M1/1‑4 (MQ=255)
                                                                         cGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtccattg   <  1:757021‑M1/76‑75 (MQ=255)
                                                                         cGtcaccggtttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtccattg   <  1:1995236‑M1/76‑75 (MQ=255)
                                                                          gtcacggttttggtgccgacttcaaaacgcagctgtggggcatccgctccgcagaaactggttagcagtccattga  <  2:4152499‑M1/76‑76 (MQ=255)
                                                                          |                                                                           
TCGGTTCTGCCGGGGCCGGGACGTTATCCCAACCTGAGCGCGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTT  >  REL606/3843712‑3843861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑