| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2948453 | 198 (0.900) | 3 (0.010) | 3/150 | 21.6 | 1.3% | coding (1853/2145 nt) | sbm | methylmalonyl‑CoA mutase |
| ? | REL606 | 3953252 = | 262 (1.190) | coding (270/2547 nt) | cyaA | adenylate cyclase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 205 total aligned reads displayed.
GCCAGGATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTGGGCGCATCCTC > REL606/2948378‑2948528 | gCCAGGATGGACGCGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAg < 1:921771/76‑1 (MQ=255)gCCAGGATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAg < 1:3126122/76‑1 (MQ=255)gCCAGGATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAg > 2:2369167/1‑76 (MQ=255)gCCAGGATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAg < 1:2473864/76‑1 (MQ=255) cAGGATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAgtc > 2:4251609/1‑74 (MQ=255) aGGATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGccc > 1:301864/1‑76 (MQ=255) ggATGGACACGGTCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCg < 2:2112043/76‑1 (MQ=255) ggATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCg < 1:4794011/76‑1 (MQ=255) ggATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCg < 1:5070618/76‑1 (MQ=255) ggATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCg < 2:5994642/76‑1 (MQ=255) gATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGa < 2:4696888/76‑1 (MQ=255) aTGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGAt > 1:1658860/1‑76 (MQ=255) tGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATg < 1:2413295/76‑1 (MQ=255) ggACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGt > 1:2052541/1‑76 (MQ=255) ggACACGATCGCGGCGCGAAAGAGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGt > 2:5066745/1‑76 (MQ=255) gACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGtt < 1:5512616/76‑1 (MQ=255) gACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGtt < 2:1346546/76‑1 (MQ=255) acacGAGCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTtc < 2:2288693/76‑1 (MQ=255) cacGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTtct < 2:1292760/76‑1 (MQ=255) cacGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTtct > 2:2362527/1‑76 (MQ=255) acGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTtctc > 2:825978/1‑76 (MQ=255) cGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTctct < 2:4082120/76‑1 (MQ=255) cGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTctct > 1:4888302/1‑76 (MQ=255) gATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTa < 1:6328966/76‑1 (MQ=255) gATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTa < 1:1914964/76‑1 (MQ=255) gATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTa > 2:4319591/1‑76 (MQ=255) ctCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTac < 2:1148614/75‑1 (MQ=255) aTCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTac > 1:6541575/1‑76 (MQ=255) aTCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTac < 1:2540354/76‑1 (MQ=255) tCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTaca < 1:4236126/76‑1 (MQ=255) gcgAAAGTGATCTCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAag < 1:6692945/76‑1 (MQ=255) gcgAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAag < 1:4716249/76‑1 (MQ=255) cgAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAaga < 1:1202415/76‑1 (MQ=255) cgAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAaga < 2:4107764/76‑1 (MQ=255) cgAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAaga < 1:5879899/76‑1 (MQ=255) aaaGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAgaga > 2:5718564/1‑76 (MQ=255) aaaGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAgaga > 2:6795146/1‑76 (MQ=255) aaGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGACGAGAt > 2:3591390/1‑76 (MQ=255) aaGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGAt < 1:5347774/76‑1 (MQ=255) aGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATc < 1:5366139/76‑1 (MQ=255) tGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATtgc < 2:6245543/76‑1 (MQ=255) tGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATcgc < 2:3407179/76‑1 (MQ=255) tGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATcgc > 1:179622/1‑76 (MQ=255) ttCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATcgccc < 2:5949384/75‑1 (MQ=255) aTCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATcgccc < 2:1951651/76‑1 (MQ=255) aTCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATcgccc < 1:3528135/76‑1 (MQ=255) cGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATcgcccgc > 2:6299675/1‑76 (MQ=255) gCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATcgcccgcc > 2:1059309/1‑76 (MQ=255) ccAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCt < 2:5191631/76‑1 (MQ=255) ccAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCt < 1:3558243/76‑1 (MQ=255) cAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTg < 1:109342/76‑1 (MQ=255) cAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTg > 1:3480737/1‑76 (MQ=255) aGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTgg < 1:154557/76‑1 (MQ=255) aGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTgg > 1:1957756/1‑76 (MQ=255) gcCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCg > 2:2775491/1‑76 (MQ=255) gcCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCg > 2:6539798/1‑76 (MQ=255) cTATTCCGCTCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTa > 1:4561031/1‑76 (MQ=255) cTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTa > 1:277803/1‑76 (MQ=255) cTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTa < 1:5333203/76‑1 (MQ=255) tATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAg < 2:6911892/76‑1 (MQ=255) tATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAg > 2:3120603/1‑76 (MQ=255) aTTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGa < 1:556900/76‑1 (MQ=255) aTTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGa > 1:2600002/1‑76 (MQ=255) tCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGaaa > 1:526715/1‑76 (MQ=255) tCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGaaa > 1:3788780/1‑76 (MQ=255) cGATCTCGGTTTCGACGTAGATTTAACCCCGATTTTCTCTACACCTGAAGAGACCCCCCGCCTGGCCGTAGAAAac < 2:2286671/76‑1 (MQ=255) gATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAacg > 2:476076/1‑76 (MQ=255) gATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAacg > 1:3741806/1‑76 (MQ=255) ttccGGTTTCGACGTAAATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAacgac < 2:4976824/73‑1 (MQ=255) tctcGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAatgac < 1:5095359/76‑1 (MQ=255) tctcGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAacgac > 1:5984910/1‑76 (MQ=255) ctcGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAacgacg > 1:142591/1‑76 (MQ=255) ctcGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAacgacg > 2:6478287/1‑76 (MQ=255) tcGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGt > 1:2214771/1‑76 (MQ=255) cGGTTTCGACTTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCCCCCGCCTGGCCGTAGAAAACGACGtt < 1:1288403/76‑1 (MQ=255) tgTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTc > 2:5160657/2‑76 (MQ=255) ggTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTc > 2:1709038/1‑76 (MQ=255) gtgtCGACGTAATTTTAACCCCGATTTTCTCTCCACCTGAAGAGATCCCCCGCCTGGCCGTAGAAAACGACGTTCa < 2:4034420/73‑1 (MQ=255) gTTTCGAGGTAGATTTAACCCCGAGGTTCCCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCa < 1:608174/76‑1 (MQ=255) gTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCa < 1:3184537/76‑1 (MQ=255) gTTGCGACGTAGATTTAAGCCCGATGTTCTCTCCACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCa < 2:528483/76‑1 (MQ=255) tttCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCAc > 1:4398272/1‑76 (MQ=255) tttCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCAc > 1:3388/1‑76 (MQ=255) tCGACGTAGATTTAAGCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGt < 1:6766771/76‑1 (MQ=255) gACTTAGATTTAACCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAg < 2:4507470/76‑1 (MQ=255) gACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAg > 1:565032/1‑76 (MQ=255) gACGTAGATTTAAGCCCGATGTCCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAg < 2:6137017/76‑1 (MQ=255) aCGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGt > 2:3088340/1‑76 (MQ=255) aCGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGt > 2:2050227/1‑76 (MQ=255) tgTAGTTTTAACCCCGTTGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTg < 1:3950569/75‑1 (MQ=255) gTATATTTAAGCCCGATGTTCTCTCCCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTgg < 2:5461043/76‑1 (MQ=255) gTATATTTAAGCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTgg < 2:2520676/76‑1 (MQ=255) gTAGATTTAAGCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTgg < 2:3050080/76‑1 (MQ=255) agttttAAGCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTGGgc < 1:4810836/73‑1 (MQ=255) aGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTGGgc < 2:1463392/76‑1 (MQ=255) aGATTTAACCCCGATGTTCTCTACCCCTGAAGAGACCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTGGgc < 1:4144705/76‑1 (MQ=255) gATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGAGGgcg > 1:3640092/1‑76 (MQ=255) ttAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTGGGCGCAt > 1:4274225/1‑76 (MQ=255) aGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGCAGAAAACGACGTTCACGTAGTGGGCGCATCCt > 2:6657908/1‑76 (MQ=255) gCCCGATGTTCTCTACCCCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTGGGCGCATCCTc < 1:4826846/76‑1 (MQ=255) | GCCAGGATGGACACGATCGCGGCGCGAAAGTGATCGCCAGCGCCTATTCCGATCTCGGTTTCGACGTAGATTTAAGCCCGATGTTCTCTACACCTGAAGAGATCGCCCGCCTGGCCGTAGAAAACGACGTTCACGTAGTGGGCGCATCCTC > REL606/2948378‑2948528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |