| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039707 | 91 (0.410) | 4 (0.020) | 4/144 | 20.3 | 3.7% | coding (422/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040225 | 121 (0.570) | intergenic (‑97/+46) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 133 total aligned reads displayed.
ATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTA > REL606/2040150‑2040299 | attattCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCtt > 2:2439646/1‑76 (MQ=255) tattCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCtttt > 1:3475574/1‑76 (MQ=255) attCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTg < 1:554897/76‑1 (MQ=255) attCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTg > 1:4967071/1‑76 (MQ=255) attCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTg < 1:2914317/76‑1 (MQ=255) attCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTg > 2:3622021/1‑76 (MQ=255) tCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTgga < 2:1371264/76‑3 (MQ=255) tCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGaa < 2:5866059/76‑1 (MQ=255) cccAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAg < 2:2222775/76‑1 (MQ=255) ccAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGc > 1:1078465/1‑76 (MQ=255) cAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGcc > 2:2268562/1‑76 (MQ=255) cAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGcc < 2:715506/76‑1 (MQ=255) aaTACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGccc > 1:6788407/1‑76 (MQ=255) aTACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGcc > 2:3691675/1‑74 (MQ=255) aTACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCa > 1:2469630/1‑76 (MQ=255) aTACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCa < 2:2567121/76‑1 (MQ=255) tACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCAt > 1:91311/1‑76 (MQ=255) aCTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCAtt > 1:374692/1‑76 (MQ=255) cTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCAttt < 1:4726524/76‑1 (MQ=255) cTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCAttt < 2:2515629/76‑1 (MQ=255) cTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCAttt > 2:1665286/1‑76 (MQ=255) cTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCAttt < 2:4280766/76‑1 (MQ=255) aaTATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCt < 2:494369/76‑1 (MQ=255) aaTATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCt > 2:2061224/1‑76 (MQ=255) atatTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCtt > 2:2663307/1‑76 (MQ=255) atatTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCtt < 1:6575324/76‑1 (MQ=255) atatTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCtt > 1:4650017/1‑76 (MQ=255) tattatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCttt < 2:687261/76‑1 (MQ=255) tattatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCttt > 1:5165125/1‑76 (MQ=255) attatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCtttt < 1:5370451/76‑1 (MQ=255) attatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCtttt > 2:4059086/1‑76 (MQ=255) attatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCtttt > 1:1660282/1‑76 (MQ=255) attatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCtttt > 1:2120085/1‑76 (MQ=255) ttatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTa > 2:6849350/1‑76 (MQ=255) tatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTaa > 2:1048667/1‑76 (MQ=255) tatCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTaa < 1:66380/76‑1 (MQ=255) tCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACt > 1:5068367/1‑76 (MQ=255) acacCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGt < 1:4680805/76‑1 (MQ=255) cacCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTa < 2:1986650/76‑1 (MQ=255) cacCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTa > 1:3156183/1‑76 (MQ=255) cacCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTa < 1:2066720/76‑1 (MQ=255) cccATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTAtt < 1:2776244/76‑1 (MQ=255) aTAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCa < 2:3479516/76‑1 (MQ=255) tAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCAt < 2:4323616/76‑1 (MQ=255) tAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCAt < 1:2935284/76‑1 (MQ=255) aaaaaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATc > 2:1813906/1‑76 (MQ=255) aaaaaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATc < 1:884069/76‑1 (MQ=255) aaaaaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATc > 1:1189345/1‑76 (MQ=255) aaaaaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATc > 1:5878423/1‑76 (MQ=255) aaaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTa < 2:2098827/76‑1 (MQ=255) aaaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTa > 1:966720/1‑76 (MQ=255) aaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTaa < 1:2172909/76‑1 (MQ=255) aaGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTaa < 1:2262672/76‑1 (MQ=255) aGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTaaa > 1:1624971/1‑76 (MQ=255) aGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTaaa > 2:3750543/1‑76 (MQ=255) gATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAAt < 1:4237844/76‑1 (MQ=255) gATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAAt < 1:3555907/76‑1 (MQ=255) aTGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATa > 2:3878792/1‑76 (MQ=255) aTGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATa < 2:2822807/76‑1 (MQ=255) ccTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGc > 2:2557972/1‑76 (MQ=255) cTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTCAATAGGcc > 2:6008079/1‑76 (MQ=255) cTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGcc < 1:6858401/76‑1 (MQ=255) cTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGcc > 1:3350681/1‑76 (MQ=255) ttATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCa > 1:2124548/1‑76 (MQ=255) ttATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCa < 2:178772/76‑1 (MQ=255) ttATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCa > 1:2347367/1‑76 (MQ=255) ttATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCT‑AATAGGCCat < 1:7022016/76‑1 (MQ=255) tATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCat < 1:2382596/76‑1 (MQ=255) tATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCat < 1:1791147/76‑1 (MQ=255) aTCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCata > 1:6216785/1‑76 (MQ=255) tCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCatat < 2:3568705/76‑1 (MQ=255) tCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCatat < 2:567922/76‑1 (MQ=255) cTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATc > 1:3870089/1‑76 (MQ=255) gATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATcac > 1:1993331/1‑76 (MQ=255) atatTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATcaca > 1:6979907/1‑76 (MQ=255) atatTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATcaca < 1:197854/76‑1 (MQ=255) tatTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACAt < 2:6089931/76‑1 (MQ=255) atTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATc > 1:2500555/1‑76 (MQ=255) ttttACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCtt < 2:630214/76‑1 (MQ=255) ttttACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCtt < 1:5172808/76‑1 (MQ=255) tttACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTa < 2:421967/76‑1 (MQ=255) aCATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTAccc < 2:6074185/76‑1 (MQ=255) aTTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaa < 1:4390972/76‑1 (MQ=255) ttttCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaat > 2:4662444/1‑76 (MQ=255) ttttCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaat < 2:4742942/76‑1 (MQ=255) ttttCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaat < 1:1136577/76‑1 (MQ=255) ttCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaataa > 2:1605200/1‑76 (MQ=255) tcCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaataataa < 2:1035308/76‑1 (MQ=255) tcCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaataataa > 1:132885/1‑76 (MQ=255) tcCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaataataa > 1:5388262/1‑76 (MQ=255) ccAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaataataat > 2:5705704/1‑76 (MQ=255) ccAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCaataataat < 1:4770081/76‑1 (MQ=255) cAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAAtt > 2:1897031/1‑76 (MQ=255) aaCGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAAttt < 1:6098304/76‑1 (MQ=255) aaCGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAAttt > 2:3735654/1‑76 (MQ=255) aaCGCTTTTGAAGCCCATTTCTTTTAACTGTATCTCATCTAAATAGGCCATATCACATCTTACCCAATAATAAttt > 2:3735652/1‑76 (MQ=255) cTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGtt < 2:6352412/76‑1 (MQ=255) ttttGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTa < 2:3002577/76‑1 (MQ=255) ttttGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTa > 2:6452492/1‑76 (MQ=255) ttttGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTa > 1:859755/1‑76 (MQ=255) | ATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAACGCTTTTGAAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTA > REL606/2040150‑2040299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |