| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 330032 = | 318 (1.440) | 61 (0.280) +C |
5/148 | 17.6 | 21.1% | intergenic (+22/+315) | codA/cynR | cytosine deaminase/DNA‑binding transcriptional dual regulator |
| ? | REL606 | = 330430 | 143 (0.650) | coding (817/900 nt) | cynR | DNA‑binding transcriptional dual regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/330106‑330032‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTGGCAGACAGCCGCCGCGAAGGCATTTTTG < REL606/330430‑330398 | ACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAC < 1:3430957/76‑1 CGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACA > 1:1673718/1‑76 CGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACA < 1:6798217/76‑1 CGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACA < 1:7053524/76‑1 GCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAG > 2:5699799/1‑76 GCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAG < 2:4550568/76‑1 CTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGC > 2:6563914/1‑76 CTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGC > 2:4528930/1‑76 TTACCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCT < 1:6482878/76‑1 TATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTG > 2:5550597/1‑76 TATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTG > 2:2444928/1‑76 TATCAGCCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTG < 2:4982788/76‑1 ATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGG > 1:3888227/1‑76 ATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGG > 1:2456969/1‑76 ATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACACCTGG > 2:1118224/1‑76 cCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGC < 1:1065783/75‑1 TCAGCCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGC < 1:7045696/76‑1 cgGGCCTACGAGTTCAGTTCTCGCCGTAGGCCGGATAAGGTGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA < 1:3531084/74‑1 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTAAACTACAGCTGGCA > 1:5497830/1‑76 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA > 2:1810306/1‑76 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA > 2:4476722/1‑76 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA > 2:4468995/1‑76 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA > 2:6206921/1‑76 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA > 2:6899150/1‑76 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA > 1:4836847/1‑76 CAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA > 1:6403730/1‑76 CAGGCATACGAGTTCAGTGCTCTACGTGGCCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCA < 2:5733220/76‑1 gGGCCTACGAGTGCAGTGCTCTACGTGGGCCGGATAGGGGTTTCACGCCGCATCCGGCATAAACTACAGCTGGCAG < 1:299442/75‑1 AGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAG > 1:7129596/1‑76 AGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAG > 2:4247001/1‑76 AGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAG < 1:3012364/76‑1 AGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAG > 2:2544900/1‑76 AGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAG > 2:5709119/1‑76 GGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGA > 1:283001/1‑76 GGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGA > 1:4826852/1‑76 gctTACGAGTTCATTGCTCTACGTGGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGAC < 2:4175672/73‑1 GCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGAC < 2:1806965/76‑1 GCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGAC > 2:294076/1‑76 GCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGAC > 2:3000768/1‑76 GCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGAC < 2:1521457/76‑1 CCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGGGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACA < 2:1642576/76‑1 CTACGAGTTCAGTGCTCTACGTAGGCGGAATAAGGGTTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAG < 1:5732835/76‑1 CTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAG < 1:5647915/76‑1 CTACGAGTTCAGTGCTCTACGTAGGCCGAATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAG < 2:6916476/76‑1 TACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGC > 1:6503275/1‑76 ACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCC > 1:2533307/1‑76 ACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCC < 2:238280/76‑1 ACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGAAAGCC > 2:659407/1‑76 ACGAGTTCAGTCCTCTACGTGGGCGGGATAAGGGGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCC < 1:2549105/76‑1 ACGAGTTCAGGCCTCGACGTAGGCGGGATAGGCCGTTCACGCCGCATCGGGCATAAACTACAGCTGGCAGACAGCC < 2:5608675/76‑1 gGAGTTCGGTGCGCTACGTGGCCCGGATAAGGCGTCAACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCG < 2:3718748/75‑1 CGAGTTCAGTTCTCTACGTGGGCGGGATAGGGCGTCCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCG < 1:6296498/76‑1 GAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGC > 2:4400227/1‑76 GAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGC > 1:1881774/1‑76 GAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGC > 2:1802356/1‑76 GAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACACCTGGCAGACAGCCGC > 1:3802625/1‑76 TTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGCCGC > 2:4894536/1‑76 CAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGCCGCGA > 2:5613847/1‑76 TCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGCCGCGAAGGCAT > 2:2756503/1‑76 CTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGCCGCGAAAGCATT > 2:6652318/1‑76 CTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAAGCTGGCATACACCCGCCGCGAACGAATT > 2:748773/1‑76 ACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAC > 2:2830981/1‑45 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTACAGCTGGCAGACAGCCGCCGCGAAGGCACTTTTG > 2:532001/1‑76 | ACGCTTATCAGGCCTACGAGTTCAGTGCTCTACGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/330106‑330032‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTGGCAGACAGCCGCCGCGAAGGCATTTTTG < REL606/330430‑330398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |