| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 330032 = | 318 (1.440) | 61 (0.280) +C |
5/148 | 17.6 | 21.1% | intergenic (+22/+315) | codA/cynR | cytosine deaminase/DNA‑binding transcriptional dual regulator |
| ? | REL606 | = 330430 | 143 (0.650) | coding (817/900 nt) | cynR | DNA‑binding transcriptional dual regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 318 total aligned reads displayed.
GCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGT > REL606/329957‑330106 | gCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCtt > 2:781801/1‑76 (MQ=255) cacaAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTa > 1:3599898/1‑76 (MQ=255) tcaAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGAGAGCTTAg > 1:5962634/2‑76 (MQ=255) acaACCCACCGTATATCGGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAg < 2:6156235/76‑1 (MQ=255) aaaCCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGtt > 2:724606/1‑76 (MQ=255) accaccGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTa > 1:659407/1‑76 (MQ=255) accaccGTATATATGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTa > 2:1723773/1‑76 (MQ=255) ccaccGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTAt > 1:5217018/1‑76 (MQ=255) ccGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGcc > 2:6689982/1‑76 (MQ=255) cGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCg > 2:308446/1‑76 (MQ=255) cGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCg > 1:6214218/1‑76 (MQ=255) gTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCgg > 1:6199408/1‑76 (MQ=255) gTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCgg > 1:5707817/1‑76 (MQ=255) tataTCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGa < 1:5002024/76‑1 (MQ=255) tataTCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGa > 1:2474929/1‑76 (MQ=255) atatCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGAt > 1:7156543/1‑76 (MQ=255) atatCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGAt < 2:4646218/76‑1 (MQ=255) atatCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGAt > 1:5862363/1‑76 (MQ=255) atatCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGAt < 1:1983528/76‑1 (MQ=255) atCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgc > 1:3925323/1‑76 (MQ=255) tcgggACCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcg < 2:630381/73‑1 (MQ=255) cTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcgg > 1:2852437/1‑76 (MQ=255) tGGAGCAGTCAGAAGCTATCGATTACAAACGTTGAACGACTGGGTTACAGAGAGCTTAGATTATCGCGGCTgcggc > 2:3026624/1‑76 (MQ=255) tGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggc > 2:1509396/1‑76 (MQ=255) ggAGCCGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggcg < 2:2750475/76‑1 (MQ=255) ggAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggcg > 1:5613847/1‑76 (MQ=255) ggAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggcg < 2:6036343/76‑1 (MQ=255) ggAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggcg < 2:7136244/76‑1 (MQ=255) ggAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggcg < 1:802861/76‑1 (MQ=255) ggAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATgcggcg > 1:4894536/1‑76 (MQ=255) agcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAAc > 1:3280559/1‑76 (MQ=255) gcCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACg > 2:2533307/1‑76 (MQ=255) ccAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGaaacc > 1:2523388/1‑73 (MQ=255) aGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCt < 2:6488149/76‑1 (MQ=255) gAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCtt < 2:656406/76‑1 (MQ=255) gAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCtt < 2:248967/76‑1 (MQ=255) aaGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAAGG‑CCCTa > 1:155919/1‑76 (MQ=255) aaGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTa < 1:3838147/76‑1 (MQ=255) ccATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATcc < 1:3204000/76‑1 (MQ=255) ccATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATcc < 1:1634763/76‑1 (MQ=255) cATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGGACG‑CCTTATCCg > 2:4456528/1‑76 (MQ=255) cGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGGACG‑GCCTATCCGGcc > 1:4528930/1‑76 (MQ=37) cGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGGAAC‑CCTTTTCCgggc > 1:6563914/1‑74 (MQ=37) cGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACGACCTATTCCGGc > 2:3294244/1‑76 (MQ=37) cGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGcc > 1:2756503/1‑76 (MQ=255) cGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGcc > 2:2882840/1‑76 (MQ=255) gATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCt < 2:1984594/76‑1 (MQ=255) gATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCt < 2:4002788/76‑1 (MQ=255) gATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAAAG‑CCTTATCCGGCCt > 1:5074025/1‑76 (MQ=255) aTTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTa < 2:5834406/76‑1 (MQ=255) aTTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTa < 2:6935641/76‑1 (MQ=255) ttACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTAc < 2:3670315/76‑1 (MQ=255) ttACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTAc < 1:2168532/76‑1 (MQ=255) ttACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTAc < 2:1660642/76‑1 (MQ=255) tACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGGACG‑GCTTATTCCGCCCACg > 1:5483745/1‑76 (MQ=25) aaccGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTag < 2:3461814/73‑1 (MQ=255) aaCGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTaga < 2:5264365/76‑1 (MQ=255) cGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGc < 2:2247964/76‑1 (MQ=255) cGTTGAACGACTGGATTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGc < 2:5189621/76‑1 (MQ=255) gTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCa < 2:4889956/76‑1 (MQ=255) gTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCa < 2:6785791/76‑1 (MQ=255) ttGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGccc > 1:1370476/1‑74 (MQ=255) tGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATTCGGCCTACGTAGAGCACt > 1:4468995/1‑76 (MQ=255) aaCGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCCTATCCGGCCCCCGTAGAGCACTGa > 1:2271741/1‑76 (MQ=18) aCGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGaa > 1:338609/1‑76 (MQ=255) cGACTGGGTTACAGCGAGCTTAGTTTATGCCCGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAAc < 1:1758155/76‑1 (MQ=255) gACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACt < 2:125825/76‑1 (MQ=255) gACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCCTATCCGGGCTAACTAGAGCACCGAAcc > 1:1857103/1‑75 (MQ=18) aCTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTc < 1:739307/76‑1 (MQ=255) cTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTa < 2:414566/58‑1 (MQ=255) cTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCg < 1:3757899/76‑1 (MQ=255) cTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCg < 1:1061793/76‑1 (MQ=255) cTGGGTTACAGCGAGCTTAGTTTATGCCAGATGCGGCGTGAACG‑CCTTATCCGGCCTa > 1:414566/1‑58 (MQ=255) tGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATACGGCCTACGTAGAGCACTGAACTCGt > 1:6058331/1‑76 (MQ=255) gggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGGACG‑CCCTATCCGGCCTACGGAACGAACTGGACTCGTa > 2:1796697/1‑76 (MQ=17) gggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTa > 1:1180451/1‑76 (MQ=255) ggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAg < 2:4358570/76‑1 (MQ=255) ggTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAg > 1:3081655/1‑76 (MQ=255) gTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTTTTCCGCCTACGTAGAGCAATGAACTCCTAgg > 1:4400227/1‑76 (MQ=17) ttACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGc < 2:4787058/76‑1 (MQ=255) ttACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGc > 1:6899150/1‑76 (MQ=255) ttACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGc > 2:5316193/1‑76 (MQ=255) tACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑GCCTATTCGGCCCACGTAAAGCACCTAACTCGTTGGcc > 1:975328/1‑76 (MQ=14) tACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGcc > 1:3488651/1‑76 (MQ=255) aCAGCGAGCTTAGTTTATGCCGGATGCGGCGTTCAAG‑CCTTATTCCTCCCTCGTATAGCACGGTAGTCGTTGGCCt > 1:6372848/1‑76 (MQ=9) aCAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCt < 1:2619072/76‑1 (MQ=255) aCAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCt < 1:5341674/76‑1 (MQ=255) aCAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCCGCCTACGTAGAGCACTGAACTCGTAGGccg > 2:1937755/1‑75 (MQ=255) cAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTg < 1:6799607/76‑1 (MQ=255) cAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTg < 1:4217509/76‑1 (MQ=255) cAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCCTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTg > 1:2020130/1‑76 (MQ=255) cGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATTCGGCCTACGTAGAGCACTGAACTCGTAGGCCCGATa > 2:2795833/1‑76 (MQ=255) gAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATaa > 1:3000768/1‑76 (MQ=38) gAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATaa > 1:294076/1‑76 (MQ=38) gAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACCGAAATCGTAGGCCTGGTaa > 1:4308707/1‑76 (MQ=11) gCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCCTTTCCAGCCTACGGAGAGAACTGGACTCGTAGGGCTGGTAAGc > 1:2430568/1‑76 (MQ=11) tttAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGc < 2:5118432/74‑1 (MQ=14) ttAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGt > 2:5403938/1‑76 (MQ=31) ttAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGt < 2:4269400/76‑1 (MQ=31) ttAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGt < 2:3823750/76‑1 (MQ=31) | GCACAAACCACCGTATATCTGGAGCAGCCAGAAGCCATCGATTACAAACGTTGAACGACTGGGTTACAGCGAGCTTAGTTTATGCCGGATGCGGCGTGAACG‑CCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGT > REL606/329957‑330106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |