| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 419059 = | 244 (1.100) | 6 (0.030) | 3/136 | 18.4 | 2.8% | coding (305/615 nt) | cyoC | cytochrome o ubiquinol oxidase subunit III |
| ? | REL606 | 419079 = | 197 (0.980) | coding (285/615 nt) | cyoC | cytochrome o ubiquinol oxidase subunit III | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCTGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCCTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/419140‑419059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggctTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAC > REL606/419079‑419153 TGCTGTTGTTCAGCTCCATCACCTACGGCATGGCGGGTATCGCCCTGTACAAAAACAACAAAAGACAGGTTATCTC > 2:3406468/1‑76TGCTGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGACCGGGTATCTC > 1:4634490/1‑76TGCTGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAACCAGGTTATCTC > 2:187114/1‑76 GCTGTTGTTCAGCTGCATCTCCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCC < 1:4931421/76‑1 GCTGTTGTTCAGCTCCATCACCTACGGCATGGCGGGTATCGCCCTGTACAAAAACAACAAAAAACAAGGTATCTCC > 2:6089542/1‑76 CTGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCCT < 2:2523401/76‑1 CTGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGGTATCTCCT > 1:2726798/1‑76 TGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCCTG < 1:3920820/76‑1 TGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCCTG < 2:2519757/76‑1 GTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCCTGTACAAAAACAACAAAAGCCAGGTTATCTCCTGG > 1:2800465/1‑76 GTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCCTGTACAAAAAAAACAAAAACCCGGGTATCTCCTGG > 1:5298089/1‑76 GTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCCTGG < 1:5836126/76‑1 TGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCCTGGCT < 2:3120527/76‑1 GTTCAGCTCCATCACCTACGGCATGGCGGCTATCCCCATGTACAAAAAGAACAAAAGGCAGGTTATCTCCTGGCTc > 1:3082059/1‑75 AAAACAACAAAAGCCAGGTTATCTCCTGGCTTTTGTTGTTTTT > 2:6801590/1‑43 AAAACAACAAAAGCCAGGTTATCTCCTGGCTTTTGTTGTTTTT > 2:2117967/1‑43 AAAACAACAAAAGCCAGGTTATCTCCTGGCTTTTGTTGTTTTT < 1:2117967/43‑1 AAAACAACAAAAGCCAGGTTATCTCCTGGCTTTTGTTGTTTTT < 1:6801590/43‑1 AAAACAACAAAAGCCAGGTTATCTCCTGGCTTTTGTTGTTTT > 2:3584711/1‑42 AAAACAACAAAAGCCAGGTTATCTCCTGGCTTTTGTTGTTTT < 1:3584711/42‑1 CCTGGCTTTTGTTGTTTTTGGACATGGCGATAGTCCCCATGGCGTCGGTGATGGAGCTGAACAACAGCAAGAAAGT > 2:295507/1‑76 CTGGTTTTTTTTGTTTTTGTACAGGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTT < 2:2148557/76‑1 CTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTT > 2:6855205/1‑76 CTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTT > 1:560831/1‑76 CTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTT > 2:7134649/1‑76 TGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTT > 1:2885539/1‑76 ggtTTTTGTTTTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTC < 1:2895437/73‑1 GGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTC > 2:742524/1‑76 GGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTC > 1:5356062/1‑76 gtTTTTGTTTTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCA < 1:6922473/74‑1 gtTTTTGTTTTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCA < 1:4726697/74‑1 gtTTTTGTTGTTTTTGTACAGGGCGATACCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCA < 2:65062/74‑1 tTTTTTTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAA < 2:3135740/75‑1 CTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAA < 2:6868267/76‑1 CTTTTGTCGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGATTCAA > 1:6924635/1‑76 TTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAC > 2:2250561/1‑76 TTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAC > 2:6763766/1‑76 TTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGCGATGGAGCTGAACAACAGCAAGAAAGTTTCAAC > 2:1078430/1‑76 TGCTGTTGTTCAGCTCCATCACCTACGGCATGGCGGCTATCGCCATGTACAAAAACAACAAAAGCCAGGTTATCTCCTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/419140‑419059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggctTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAC > REL606/419079‑419153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |