| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 419059 = | 244 (1.100) | 6 (0.030) | 3/136 | 18.4 | 2.8% | coding (305/615 nt) | cyoC | cytochrome o ubiquinol oxidase subunit III |
| ? | REL606 | 419079 = | 197 (0.980) | coding (285/615 nt) | cyoC | cytochrome o ubiquinol oxidase subunit III | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 221 total aligned reads displayed.
GAATTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACC > REL606/419004‑419154 | gAATTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCtt < 2:5723852/76‑1 (MQ=255)gAATTCGTAAATTTCGATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCtt < 2:1584174/76‑1 (MQ=255) aaTTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCttt < 2:2527296/76‑1 (MQ=255) aaTTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCttt < 2:3795883/76‑1 (MQ=255) aTTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCtttt > 1:5553396/1‑76 (MQ=255) aTTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCtttt > 1:4256088/1‑76 (MQ=255) aTTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCtttt < 2:1239333/76‑1 (MQ=255) aTTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCtttt < 2:5816380/76‑1 (MQ=255) aTTCGTAGATTCCCTTCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCtttt < 2:87328/76‑1 (MQ=255) ttCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTttg > 2:5064041/1‑76 (MQ=255) ttCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTttg < 2:5910169/76‑1 (MQ=255) tCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTttgt > 1:1945450/1‑76 (MQ=255) cGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTttgtt > 1:6176413/1‑76 (MQ=255) tAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTtgttgt > 2:1853870/1‑76 (MQ=255) tAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTtgttgt > 1:4005398/1‑76 (MQ=255) aGATTTCCCTCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTgttgtt < 2:2782721/76‑1 (MQ=255) aGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTgttgtt > 1:4515088/1‑76 (MQ=255) gATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGttt > 1:5045863/1‑76 (MQ=255) gATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGttt < 1:3244825/76‑1 (MQ=255) tttCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGttttt > 1:6332094/1‑76 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt > 1:6004581/1‑76 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt < 1:6395413/76‑1 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt > 1:6643628/1‑76 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt < 1:6867827/76‑1 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt < 2:79232/76‑1 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt > 1:2957859/1‑76 (MQ=255) tCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGt < 2:2789646/76‑1 (MQ=255) ccATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTa < 1:5301315/76‑1 (MQ=255) cATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTAc < 1:5187569/76‑1 (MQ=255) cATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTAc < 1:2443648/76‑1 (MQ=255) tCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACAt < 1:2053310/76‑1 (MQ=255) tCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACAt < 1:1987044/76‑1 (MQ=255) cccGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATg > 1:4922695/1‑76 (MQ=255) ccGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATgg < 1:4672893/76‑1 (MQ=255) cGATAAATCCGGCACCAAACAACCAGGTCACCGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGc < 1:219651/76‑1 (MQ=255) cGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGc < 1:1716654/76‑1 (MQ=255) cGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGc < 1:2930760/76‑1 (MQ=255) aTAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGa > 1:1254852/1‑76 (MQ=255) tAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGAt < 1:5444368/76‑1 (MQ=255) tAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGAt > 2:3436709/1‑76 (MQ=255) tAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGAt > 1:4217844/1‑76 (MQ=255) aaaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATa > 1:5698157/1‑76 (MQ=255) aaaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATa > 1:5739057/1‑76 (MQ=255) aaaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATa > 2:4867498/1‑76 (MQ=255) aaaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATa < 1:7061068/76‑1 (MQ=255) aaaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATa < 1:6538232/76‑1 (MQ=255) aaaCCCGGCCCCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATa < 1:1074019/76‑1 (MQ=255) aaaCCCGGCCCCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATa < 1:230997/76‑1 (MQ=255) aaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAg < 2:2351832/76‑1 (MQ=255) aaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAg > 2:3246449/1‑76 (MQ=255) aaTCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAg < 2:115285/76‑1 (MQ=255) gccccAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCa < 2:7140257/73‑1 (MQ=255) gCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCa < 2:6503373/76‑1 (MQ=255) cACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCAt > 2:5301162/1‑76 (MQ=255) cACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCAt > 1:6391120/1‑76 (MQ=255) aCCAAACACCCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATg < 1:5170440/76‑1 (MQ=255) ccAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGc > 2:1454910/1‑76 (MQ=255) cAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGcc > 1:967687/1‑76 (MQ=255) cAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGcc > 2:3420665/1‑76 (MQ=255) cAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGcc > 1:1535364/1‑76 (MQ=255) cAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGcc > 1:2778823/1‑76 (MQ=255) aacaacCAGCACAACGCCAGCAAGGGGAAACCGTGCCTTTTGTTGTTTTTCCACCTGCGGAAACCCGCCATGCCGt < 2:367534/76‑1 (MQ=255) acaacCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTa > 1:3715977/1‑76 (MQ=255) aacCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAgg > 1:817581/1‑76 (MQ=255) cgggTCACCCCCAGCCAGGAGATACCCTGGTTTTTTTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGa < 2:7041835/74‑1 (MQ=255) cAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGa > 1:2636925/1‑76 (MQ=255) cAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGa > 2:3869490/1‑76 (MQ=255) cAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGa > 2:1687387/1‑76 (MQ=255) gTCACCGCCGGCAGGGGGATAACTTGGCTTTTGTTGTTTTTGTACATGGCGAGAGCCGCCATGCCGTAGGTGATgg < 2:5121609/76‑1 (MQ=255) tCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGa > 2:4549370/1‑76 (MQ=255) cAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAg > 1:2492643/1‑76 (MQ=255) cAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAg > 2:1274106/1‑76 (MQ=255) cAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAg > 2:3472046/1‑76 (MQ=255) cAACCCCAGCAAGGAGATAACCTGGTTTTTGTTTTTTTTGTACATGGCAATACCCGCCATGCCGTAGGTGATGGAg < 2:6608356/76‑1 (MQ=255) aaCGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGc > 1:3628070/1‑76 (MQ=255) aaCGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGCGATGGAGc > 1:4932567/1‑76 (MQ=255) cGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTg > 1:1399693/1‑76 (MQ=255) gccagccaGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGa > 2:2302182/1‑76 (MQ=255) gccagccaGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGa > 2:4254971/1‑76 (MQ=255) gagccagGAGATAACCTGCCTTTTGTTCTTTTTGTACATGGGGATAGCCGCCATGCCGTAGGTGATGGAGCTGaac < 1:3082059/75‑1 (MQ=255) cagccggGAGATAGCTTGGCTTTTGTTTTTTTTTTACAGGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaac < 1:3497692/76‑1 (MQ=255) cagccagGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaac > 2:7108214/1‑76 (MQ=255) cagccagGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaac > 1:445615/1‑76 (MQ=255) agccagGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaaca > 2:3120527/1‑76 (MQ=255) ccagGAGATACCCGGGTTTTTGTTTTTTTTGTACAGGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGaacaac < 1:5298089/76‑1 (MQ=255) cagGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAacaaca > 2:2519757/1‑76 (MQ=255) agaTACCCTGTCTTTTGTTGTTTTTGTACAGGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCaa < 2:5886495/76‑1 (MQ=255) tAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGaa > 1:5850032/1‑76 (MQ=255) ccTGGCTTTTGTTGTTTTTGGACATGGCGATAGTCCCCATGGCGTCGGTGATGGAGCTGAACAACAGCAAGAAAGt > 2:295507/1‑76 (MQ=255) cTGGTTTTTTTTGTTTTTGTACAGGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGtt < 2:2148557/76‑1 (MQ=255) tGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGttt > 1:2885539/1‑76 (MQ=255) ggCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTc > 1:5356062/1‑76 (MQ=255) ggCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTc > 2:742524/1‑76 (MQ=255) gtttttGTTTTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCa < 1:4726697/74‑1 (MQ=255) cTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCaa < 2:6868267/76‑1 (MQ=255) cTTTTGTCGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGATTCaa > 1:6924635/1‑76 (MQ=255) ttttGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAc > 2:2250561/1‑76 (MQ=255) ttttGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAc > 2:6763766/1‑76 (MQ=255) tttGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAcc > 2:6105395/1‑76 (MQ=255) tttGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAAcc > 1:7037515/1‑76 (MQ=255) | GAATTCGTAGATTTCCATCCCGATAAATCCGGCACCAAACAACCAGGTCAACGCCAGCCAGGAGATAACCTGGCTTTTGTTGTTTTTGTACATGGCGATAGCCGCCATGCCGTAGGTGATGGAGCTGAACAACAGCAAGAAAGTTTCAACC > REL606/419004‑419154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |