| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3032251 = | 215 (0.970) | 4 (0.020) | 3/138 | 18.6 | 1.9% | coding (522/564 nt) | ECB_02832 | hypothetical type II secretion protein GspJ |
| ? | REL606 | 3032270 = | 206 (1.010) | coding (503/564 nt) | ECB_02832 | hypothetical type II secretion protein GspJ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3032331‑3032251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaaTGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAG > REL606/3032270‑3032344 CGCTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGG < 1:5695539/76‑1 GCTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGGACGCATAACCCTGCCTTCGCCGCCATGGGG > 1:4885017/1‑76 GCTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGGACGCATAACCCTGCATTCGCCGCAATGGGG > 1:914513/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGC < 2:950859/76‑1 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGC > 2:3186733/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGC > 2:1527102/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGC > 1:6123588/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGC > 1:3790692/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGC < 1:3722202/76‑1 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCAAAACCCTGCATTCGCCGCAATGGGGC > 1:1103211/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGGACGCATAACCCTGCATTCGCCGCAATGGGGC > 1:785106/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGGACGCATAACACTGCATTCGCCGCAATTGGGC > 2:4655374/1‑76 CTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGGACGCATAAACCTGCATTGGCCGCAATGGGGC > 2:107716/1‑76 TGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCG < 1:403782/76‑1 TGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCG < 2:6861195/76‑1 TGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCG < 1:3266658/76‑1 TGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCG < 2:4119136/76‑1 TGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCG < 1:5885876/76‑1 GGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGA < 2:5067094/76‑1 GGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGA < 2:3067096/76‑1 GGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGA > 1:1102336/1‑76 GGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGA > 1:831571/1‑76 GGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAAACCTGGATTCGCCGCCATGGGGCGA > 1:1022950/1‑76 GGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGCACGCATAACCCTGCATTCCCCGCAATGGGGCGA > 1:5223235/1‑76 GCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGAA < 2:1325504/76‑1 GCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGAA < 2:5477546/76‑1 TAACCCTGCATTCGCCGCAATGGGGCGAATGCAGGGTTAT > 2:6163024/1‑40 TAACCCTGCATTCGCCGCAATGGGGCGAATGCAGGGTTAT < 1:6163024/40‑1 TAACCCTGCATTCGCCGCAATGGGGCGAATGCAGGGTTAT > 2:4248954/1‑40 GGGGCGAATGCAGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCC < 1:2022460/76‑1 GGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGT > 1:5375182/1‑76 GCGAATGCGGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTC < 1:6630904/76‑1 GCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTC > 2:3002664/1‑76 GCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTC > 1:3713495/1‑76 GCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTC > 2:6847890/1‑76 GCGAAGGCGGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTC < 1:16203/76‑1 CGAATGCGGGGTTATGCGCCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCG < 1:4608870/76‑1 CGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCG > 2:2575343/1‑76 CGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCG > 2:2304866/1‑76 GAATGCGGGTTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGT < 2:2911969/76‑1 GAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGT > 1:4535752/1‑76 GAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGT > 2:818390/1‑76 GAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGT > 1:6213685/1‑76 GAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGT > 2:5638994/1‑76 AATGCAGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTA < 2:137979/76‑1 AATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCT‑CTTCCAGCCCGGGCCGTCGTAa > 2:2353192/1‑75 ATGCGGGGTTTGGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAG < 1:1034135/76‑1 ATGCGGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAG < 2:5891874/76‑1 CGCTGGCAGGAGAGCTGGTCGTCAGTACAGGCGATCCCTGTGGCGGTACGCATAACCCTGCATTCGCCGCAATGGGGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3032331‑3032251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaaTGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAG > REL606/3032270‑3032344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |