| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3032251 = | 215 (0.970) | 4 (0.020) | 3/138 | 18.6 | 1.9% | coding (522/564 nt) | ECB_02832 | hypothetical type II secretion protein GspJ |
| ? | REL606 | 3032270 = | 206 (1.010) | coding (503/564 nt) | ECB_02832 | hypothetical type II secretion protein GspJ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 230 total aligned reads displayed.
TGGTGGTGAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAGA > REL606/3032195‑3032345 | tggtggTGAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAAt > 2:334085/1‑76 (MQ=255)tggtggTGAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAAt < 1:6976635/76‑1 (MQ=255)tggtggTGAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAAt < 2:2618925/76‑1 (MQ=255) gtggtgAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGc < 1:759382/76‑1 (MQ=255) tggtgAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGCATGCa > 1:5742184/1‑76 (MQ=255) tggtgAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCa > 1:4935233/1‑76 (MQ=255) tggtgAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCa > 1:241158/1‑76 (MQ=255) tggtgAGGTGATCATGATAATTGCGGCCCGCGTAACAACAAGAAGCGTTCAATTTCGCCCCATTGCGGCGAATGCa > 1:4598426/1‑76 (MQ=255) tgtgaggtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAg < 2:3012155/75‑1 (MQ=255) ggtgaggtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGTAg > 1:14314/1‑76 (MQ=255) tgaggtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAggg < 2:1804822/76‑1 (MQ=255) gaggtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGt < 1:4569721/76‑1 (MQ=255) aggtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGtt < 2:6881844/76‑1 (MQ=255) aggtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGtt < 1:2157469/76‑1 (MQ=255) ggtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTa > 1:425961/1‑76 (MQ=255) gtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTAt > 2:4548277/1‑76 (MQ=255) gtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTAt < 1:735108/76‑1 (MQ=255) gtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTAt > 2:2170237/1‑76 (MQ=255) gtgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTAt < 2:3060213/76‑1 (MQ=255) tgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTCTg > 1:5972895/1‑76 (MQ=255) tgaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATg < 1:6762506/76‑1 (MQ=255) gaTCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGc < 1:4623933/76‑1 (MQ=255) tCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGt < 1:4849886/76‑1 (MQ=255) tCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGt < 2:149716/76‑1 (MQ=255) cATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTa > 2:2032908/1‑76 (MQ=255) cATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCACCCCATTGCGGCGAATGCAGGGTTATGCGTa > 2:6265286/1‑76 (MQ=255) aTGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTAc > 1:1001355/1‑76 (MQ=255) tGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTAcc > 1:991593/1‑76 (MQ=255) gATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGGTATGCGTACCg > 2:3771975/1‑76 (MQ=255) aTAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGc > 1:6866480/1‑76 (MQ=255) tAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGcc > 2:1092215/1‑76 (MQ=255) aaTTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCca < 2:5337512/76‑1 (MQ=255) aaTTGCGGCCCGCGAAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCca > 1:2738906/1‑76 (MQ=255) aTTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCcac < 1:4331109/76‑1 (MQ=255) aTTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCcac < 1:1227189/76‑1 (MQ=255) aTTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCcac < 2:3507240/76‑1 (MQ=255) tGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAg > 2:1847310/1‑76 (MQ=255) ggCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGa > 1:2506692/1‑76 (MQ=255) ggCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGa > 2:2672321/1‑76 (MQ=255) cccGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATc < 2:6610562/76‑1 (MQ=255) cccGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATc > 1:871748/1‑76 (MQ=255) cccGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATc < 1:3564907/76‑1 (MQ=255) ccGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCg > 2:2529550/1‑76 (MQ=255) ccGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCAACAGGGATCg > 1:5408365/1‑76 (MQ=255) cgcgTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGc > 1:4524633/1‑76 (MQ=255) cgcgTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGc > 1:7139075/1‑76 (MQ=255) gcgTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGcc > 1:5032907/1‑76 (MQ=255) tAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGt > 1:2065740/1‑76 (MQ=255) aacaacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTa > 2:5980820/1‑76 (MQ=255) aacaacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTa < 1:1544941/76‑1 (MQ=255) aacaacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTa < 1:4202044/76‑1 (MQ=255) aacaacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTa > 2:3220368/1‑76 (MQ=255) aacaacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTa > 1:3968685/1‑76 (MQ=255) caacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACt > 2:4616251/1‑76 (MQ=255) caacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACt < 1:3985728/76‑1 (MQ=255) caacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACt > 2:4805050/1‑76 (MQ=255) aacCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGCACTg > 1:2891133/1‑76 (MQ=255) ccAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTgac > 1:5186497/1‑76 (MQ=255) ccAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTgac < 1:5705845/76‑1 (MQ=255) aGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTgacga < 1:2032908/76‑1 (MQ=255) aGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTgacga > 2:7046633/1‑76 (MQ=255) gATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTgacgac < 1:5548099/76‑1 (MQ=255) aTGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGAcc < 2:5480282/76‑1 (MQ=255) aTGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGAcc < 1:20023/76‑1 (MQ=255) tGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCa < 1:3044913/76‑1 (MQ=255) gCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAg > 2:3847933/1‑76 (MQ=255) cGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGc > 1:4711093/1‑76 (MQ=255) ttCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATTCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGctc < 2:6682332/76‑1 (MQ=255) ttCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGctc < 1:3310016/76‑1 (MQ=255) tCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGctct > 1:5564164/1‑76 (MQ=255) aaTTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTcc > 2:1711909/1‑76 (MQ=255) ttCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGc > 2:1325504/1‑76 (MQ=255) tCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGcc < 1:1102336/76‑1 (MQ=255) cGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCa > 1:5885876/1‑76 (MQ=255) cGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCa > 1:403782/1‑76 (MQ=255) cGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCa > 1:3266658/1‑76 (MQ=255) gCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAg > 1:3722202/1‑76 (MQ=255) gCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAg > 2:950859/1‑76 (MQ=255) gCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAg < 1:3790692/76‑1 (MQ=255) gCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAg < 1:6123588/76‑1 (MQ=255) ccccATTGCGGCGAATGCAGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAgc < 1:914513/76‑1 (MQ=255) ccccATGGCGGCGAAGGCAGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAgc < 1:4885017/76‑1 (MQ=255) ccATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAgcgc < 2:405551/76‑1 (MQ=255) cATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGTCTGTACTGTCGACCAGCTCTCCTGCCAGcgcg > 2:3002560/1‑76 (MQ=255) tGCGGCGAATGCAGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGc < 1:2446449/76‑1 (MQ=255) tGCGGCGAAGGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGc < 2:4218119/76‑1 (MQ=255) cggcgAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcg > 1:3694876/1‑76 (MQ=255) ggcgAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgt > 1:5375182/1‑76 (MQ=255) gcgAATGCGGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtc < 1:6630904/76‑1 (MQ=255) gcgAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtc > 2:6847890/1‑76 (MQ=255) gcgAAGGCGGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtc < 1:16203/76‑1 (MQ=255) cgAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtcg > 2:2304866/1‑76 (MQ=255) gAATGCGGGTTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtcgt < 2:2911969/76‑1 (MQ=255) gAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtcgt > 2:5638994/1‑76 (MQ=255) gAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtcgt > 1:6213685/1‑76 (MQ=255) gAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCcgtcgt > 2:818390/1‑76 (MQ=255) aaTGCAGGGTTATGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTa < 2:137979/76‑1 (MQ=255) aTGCGGGGTTTGGCGTCCCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAg < 1:1034135/76‑1 (MQ=255) aTGCGGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAg < 2:5891874/76‑1 (MQ=255) tGCAGGGTTTTGCGTACCGCCACAGGGATCGCCGGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAGa < 1:2654232/76‑1 (MQ=255) | TGGTGGTGAGGTGATCATGATAATTGCGGCCCGCGTAACAACCAGATGCGTTCAATTTCGCCCCATTGCGGCGAATGCAGGGTTATGCGTACCGCCACAGGGATCGCCTGTACTGACGACCAGCTCTCCTGCCAGCGCGTGCCGTCGTAGA > REL606/3032195‑3032345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |