| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041682 = | 96 (0.300) | 5 (0.020) | 5/128 | 19.7 | 4.5% | coding (1139/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041834 = | 131 (0.480) | coding (987/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041767‑2041682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatgcaatACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT > REL606/2041834‑2041908 GATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATA < 1:8175607/76‑1 ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT > 2:4559737/1‑76 ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT < 1:7622379/76‑1 ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT < 1:6901624/76‑1 ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT < 1:5661094/76‑1 TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATA < 1:6613989/76‑1 CTTTTTTTGCGTTTGGGAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA < 1:1115521/76‑1 CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA < 1:5164494/76‑1 CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA < 2:6382632/76‑1 TTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAA > 1:1120883/1‑76 TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG < 2:8367564/76‑1 TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG < 1:2885052/76‑1 TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG > 1:6765480/1‑76 TTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGC > 1:6056956/1‑76 TTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCA < 1:8867528/76‑1 TTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCA < 1:8295237/76‑1 TTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCA > 1:10037149/1‑76 TGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT < 2:2892636/76‑1 TGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT < 1:7486723/76‑1 TGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT < 2:9730568/76‑1 TTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAA < 2:6176410/76‑1 TGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAG < 2:9837830/76‑1 ATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAA < 2:8535968/76‑1 ATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATATCAGAT < 2:4346212/76‑1 GACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAT < 2:9996766/76‑1 ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG > 2:2904953/1‑76 ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG > 1:9204757/1‑76 ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG < 1:4658743/76‑1 TAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGG < 1:585376/76‑1 TAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGG < 2:2039343/76‑1 AATACAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCT > 2:8078744/1‑76 ATGCAATACAAAGTAGAACCAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT < 2:5240717/76‑1 ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT < 2:4097172/76‑1 ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT < 1:5682591/76‑1 TGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTC < 2:2870705/76‑1 TGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTC < 2:8289134/76‑1 TGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTC < 1:5256/76‑1 GCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCG < 1:9051332/76‑1 GCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCG < 1:1123984/76‑1 GCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCG < 2:1274344/76‑1 CAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGA < 1:5611632/76‑1 AATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAACACAGAGACTAATGGCTTCGAG < 1:4838813/76‑1 ATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGA < 1:4207313/76‑1 TACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT < 1:2895658/76‑1 TACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT < 1:3413700/76‑1 GATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041767‑2041682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatgcaatACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT > REL606/2041834‑2041908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |