| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041682 = | 96 (0.300) | 5 (0.020) | 5/128 | 19.7 | 4.5% | coding (1139/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041834 = | 131 (0.480) | coding (987/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 151 total aligned reads displayed.
AAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT > REL606/2041759‑2041908 | aaaaaGGTCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATa < 2:7587347/76‑1 (MQ=255)aaaaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATa < 1:657403/76‑1 (MQ=255)aaaaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATa < 1:9261659/76‑1 (MQ=255) aaaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATaa < 1:1232255/76‑2 (MQ=255) aaaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATAc > 2:6441030/1‑76 (MQ=255) aaaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACa < 2:8222542/76‑1 (MQ=255) aaaGATCACTTAGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACa < 1:90621/76‑1 (MQ=255) aaGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACaa > 1:4704979/1‑76 (MQ=255) gATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAg < 1:9837830/76‑1 (MQ=255) aTCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGt < 2:6187944/76‑1 (MQ=255) aTCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGt > 1:7476559/1‑76 (MQ=255) cACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAg < 2:2037367/76‑1 (MQ=255) cACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAg < 1:2161881/76‑1 (MQ=255) aCTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGa < 1:6579117/76‑1 (MQ=255) cTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGaa < 1:8535968/76‑1 (MQ=255) tCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAAc < 2:7765667/76‑1 (MQ=255) tCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAAc < 1:4931156/76‑1 (MQ=255) cGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACa > 2:9805935/1‑76 (MQ=255) gCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAg < 2:8700691/76‑1 (MQ=255) gCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAg > 1:2510727/1‑76 (MQ=255) gCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAg < 2:8958949/76‑1 (MQ=255) gCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAg < 2:4347070/76‑1 (MQ=255) ccATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGaa < 2:3649129/76‑1 (MQ=255) cATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAat > 1:4557564/1‑76 (MQ=255) cATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAat < 1:8145082/76‑1 (MQ=255) cATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAat > 1:3610069/1‑76 (MQ=255) aTGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAata > 2:37324/1‑76 (MQ=255) aTGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAata < 1:2453826/76‑1 (MQ=255) aTGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAata > 1:7823835/1‑76 (MQ=255) tGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAatat > 2:8711615/1‑76 (MQ=255) gAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATc < 2:3109291/76‑1 (MQ=255) gAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATc > 2:8086752/1‑76 (MQ=255) aaCCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCa < 2:9249540/76‑1 (MQ=255) ccTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGa > 1:10065583/1‑76 (MQ=255) cTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGAt > 2:2564893/1‑76 (MQ=255) gTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGt > 2:7910546/1‑76 (MQ=255) gTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGt > 1:3404699/1‑76 (MQ=255) gTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGt > 1:9992034/1‑76 (MQ=255) tAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTa < 2:3389917/76‑1 (MQ=255) aGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaa > 2:1673226/1‑76 (MQ=255) aGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaa > 2:8476782/1‑76 (MQ=255) aGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaa < 2:4111923/76‑1 (MQ=255) ggATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTaaa < 2:701547/76‑1 (MQ=255) gATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAt < 1:7507504/76‑1 (MQ=255) gATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAt < 1:9996766/76‑1 (MQ=255) atTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTc > 1:9380153/1‑76 (MQ=255) tAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCca > 2:6258513/1‑76 (MQ=255) atatTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcact < 1:1435116/76‑1 (MQ=255) atatTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcact < 2:1621606/76‑1 (MQ=255) tttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcac > 1:1927787/1‑76 (MQ=255) tttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcac > 2:8270158/1‑76 (MQ=255) tttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCaactcac < 2:7468734/76‑1 (MQ=255) ttattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCcactcact < 2:7397293/76‑1 (MQ=255) tattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACtt > 1:9501402/1‑76 (MQ=255) tattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACtt > 2:2135087/1‑76 (MQ=255) tattGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACtt > 2:1787605/1‑76 (MQ=255) attGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTc > 2:6511289/1‑76 (MQ=255) attGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTc > 2:5554871/1‑76 (MQ=255) attGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTc > 1:3872080/1‑76 (MQ=255) gCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCta > 1:9077951/1‑76 (MQ=255) gCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCta > 1:6973002/1‑76 (MQ=255) cATGTATAGGATAAATCATAAATGCAATACAGAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaa > 2:7906025/1‑76 (MQ=255) aTGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaat > 1:10164032/1‑76 (MQ=255) aTGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaat < 1:2398228/76‑1 (MQ=255) tGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaata > 2:1417272/1‑76 (MQ=255) tGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaata < 1:4447402/76‑1 (MQ=255) gTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaataa > 1:6816476/1‑76 (MQ=255) gTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCtaataa > 1:8644392/1‑76 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat > 2:8320084/1‑76 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat > 2:5499918/1‑76 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat < 1:3926295/76‑1 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat > 1:3521691/1‑76 (MQ=255) tataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTaataat > 2:114170/1‑76 (MQ=255) ataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAataata > 2:5050532/1‑76 (MQ=255) ataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAataata > 2:3562065/1‑76 (MQ=255) ataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAataata > 1:5875932/1‑76 (MQ=255) ataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAataata < 1:58979/76‑1 (MQ=255) ataGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAataata < 2:2905191/76‑1 (MQ=255) ggATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACag < 1:4714059/76‑1 (MQ=255) ggATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACag < 1:1365929/76‑1 (MQ=255) gATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACaga < 1:6355545/76‑1 (MQ=255) aTAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACagag < 1:4337475/76‑1 (MQ=255) aTAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACagag < 1:890616/76‑1 (MQ=255) aTAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACagag > 1:8921344/1‑76 (MQ=255) tAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAgaga > 2:7047336/1‑76 (MQ=255) aaaTCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGAc < 1:6290948/76‑1 (MQ=255) aaaTCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGAc > 1:2347553/1‑76 (MQ=255) tCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTaa < 2:2003334/76‑1 (MQ=255) cATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAAt > 2:3044490/1‑76 (MQ=255) aTAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATg > 2:2904953/1‑76 (MQ=255) aTAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATg > 1:9204757/1‑76 (MQ=255) aatacaatacAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCt > 2:8078744/1‑76 (MQ=255) aTGCAATACAAAGTAGAACCAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCtt < 2:5240717/76‑1 (MQ=255) aTGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCtt < 1:5682591/76‑1 (MQ=255) tGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTc < 1:5256/76‑1 (MQ=255) gCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCg < 2:1274344/76‑1 (MQ=255) gCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCg < 1:1123984/76‑1 (MQ=255) cAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCga < 1:5611632/76‑1 (MQ=255) aTACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCgaga < 1:4207313/76‑1 (MQ=255) tACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAt < 1:2895658/76‑1 (MQ=255) | AAAAAGATCACTTCGCCCATGAACCTGTAGGATATTAATATTTATTGCATGTATAGGATAAATCATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT > REL606/2041759‑2041908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |