| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2036902 | 263 (1.080) | 4 (0.020) | 3/134 | 17.0 | 2.0% | coding (57/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | = 2037269 | 164 (0.750) | coding (862/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2036821‑2036902‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactccaGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGATT < REL606/2037269‑2037195 GTGAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTAT < 1:1314857/76‑1GTGAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTAT < 2:4765313/76‑1GTGAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTAT < 1:7735611/76‑1 TGAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATA < 2:7074350/76‑1 TGAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATA < 1:4194151/76‑1 GAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATAC < 2:4844538/76‑1 AACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACT < 1:7557375/76‑1 CAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCC > 2:5947422/1‑76 CAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCC > 2:3183977/1‑76 CAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCC > 1:707785/1‑76 AACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCA < 1:2864739/76‑1 GCAATTAAATCTCTAAAGTATACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATG > 2:2765891/1‑76 ATTAAATCTCTAAAGTATACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGA > 2:5137609/1‑76 TCTCTAAAGTATACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCAT > 2:2169214/1‑76 TCTCTAAAGTATACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCAT > 2:5681560/1‑76 ATACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGG > 2:6354676/1‑76 ATACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGG < 2:3502961/76‑1 ATACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGG > 2:3982432/1‑76 ACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTT < 2:1717970/76‑1 ACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTT < 2:2666458/76‑1 ACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTT > 2:5742025/1‑76 ACTCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTT > 2:5585151/1‑76 TCCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGG < 2:6395746/76‑1 CCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGA > 1:1725758/1‑76 CCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGA > 2:5151436/1‑76 CCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGA > 2:4143563/1‑76 CCAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGA > 1:2882296/1‑76 CAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGAT > 2:2835295/1‑76 CAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGAT > 2:2604176/1‑76 CAGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGAT > 1:2334032/1‑76 AGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGATT > 2:1185514/1‑76 GTGAACAACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2036821‑2036902‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atactccaGATTTGCTTGCCAGATATATTTCTCCATCTCTGGATAGCTCATGGAATGTGAATCCATCGTTAATTGGTTGGATT < REL606/2037269‑2037195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |