| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2036902 | 263 (1.080) | 4 (0.020) | 3/134 | 17.0 | 2.0% | coding (57/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | = 2037269 | 164 (0.750) | coding (862/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 264 total aligned reads displayed.
AACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAG > REL606/2036827‑2036977 | aacTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCa < 1:2864739/76‑1 (MQ=255) tattatTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAAcc > 2:3227928/1‑76 (MQ=255) attattTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAAccc > 1:6852163/1‑76 (MQ=255) ttattTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAAcccc > 1:6321926/1‑76 (MQ=255) ttattTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAAcccc < 1:1247198/76‑1 (MQ=255) ttattTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAAcccc < 1:5561307/76‑1 (MQ=255) attTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCat > 1:2916915/1‑76 (MQ=255) tttCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCata < 2:4799219/76‑1 (MQ=255) ttCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCataa < 1:2172420/76‑1 (MQ=255) ttCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCataa > 2:1340913/1‑76 (MQ=255) tCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCataat < 1:5283211/76‑1 (MQ=255) tCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCataat < 2:2804839/76‑1 (MQ=255) cacaATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCataata < 2:6614538/76‑1 (MQ=255) cacaATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCataata < 2:5206308/76‑1 (MQ=255) cacaATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCataata < 1:7065511/76‑1 (MQ=255) acaATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAatat < 1:2076960/76‑1 (MQ=255) acaATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAatat < 1:1463935/76‑1 (MQ=255) caatcaatCCCATCGAATATTTCATTAATATTTTTTGCAATTACATCTCTCAAGTATACTCGAACAGCATAATAtt > 2:2201411/1‑76 (MQ=255) caatcaatCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATAtt > 2:1842664/1‑76 (MQ=255) caatcaatCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATAtt < 1:4520828/76‑1 (MQ=255) atcaatcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATAtttt < 1:885524/76‑1 (MQ=255) atcaatcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATAtttt < 2:5343741/76‑1 (MQ=255) caatcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTaa < 1:4832974/76‑1 (MQ=255) caatcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTaa > 1:2091078/1‑76 (MQ=255) caatcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTaa > 2:7135238/1‑76 (MQ=255) atcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAAtt > 1:5672219/1‑76 (MQ=255) atcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAAtt > 1:4995075/1‑76 (MQ=255) atcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAAtt < 1:7698394/76‑1 (MQ=255) tcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTc > 1:6657429/1‑76 (MQ=255) tcCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTc < 2:6842812/76‑1 (MQ=255) cccATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCt > 1:5638704/1‑76 (MQ=255) cccATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCt > 1:4741535/1‑76 (MQ=255) ccATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTg < 1:403502/76‑1 (MQ=255) ccATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTg < 1:6177144/76‑1 (MQ=255) cATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGa < 1:4244317/76‑1 (MQ=255) cATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGa > 2:1231468/1‑76 (MQ=255) cGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGaaaa < 1:1160728/76‑1 (MQ=255) gAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGaaaaa < 1:3328602/76‑1 (MQ=255) gAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGaaaaa < 1:6479002/76‑1 (MQ=255) aaTATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAg < 1:6461083/76‑1 (MQ=255) atatTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGa > 1:7321439/1‑76 (MQ=255) tatTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGAt > 1:2569814/1‑76 (MQ=255) atTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATa < 1:5180418/76‑1 (MQ=255) atTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATa > 2:3088167/1‑76 (MQ=255) tttCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAg > 2:1622603/1‑76 (MQ=255) ttCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGt > 2:3848230/1‑76 (MQ=255) ttCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGt < 2:4310699/76‑1 (MQ=255) cATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTaa < 2:7294237/76‑1 (MQ=255) cATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTaa < 2:7627608/76‑1 (MQ=255) cATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTaa < 1:7483023/76‑1 (MQ=255) ttAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAAt > 1:1041805/1‑76 (MQ=255) ttAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAAt > 2:341805/1‑76 (MQ=255) tAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAAtt > 2:4975575/1‑76 (MQ=255) tAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAAtt < 2:2581526/76‑1 (MQ=255) atatTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGa < 1:7545634/76‑1 (MQ=255) atatTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGa < 2:3658094/76‑1 (MQ=255) tatTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaa < 1:941667/76‑1 (MQ=255) tatTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaa < 1:1631395/76‑1 (MQ=255) ttttttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGaaaa < 2:337067/76‑1 (MQ=255) tttttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAAc < 2:5653228/76‑1 (MQ=255) tttttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAAc > 2:2145143/1‑76 (MQ=255) tttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTa > 2:6522231/1‑76 (MQ=255) ttGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTAt < 1:4658854/76‑1 (MQ=255) tGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTAtt > 2:2524522/1‑76 (MQ=255) tGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTAtt > 2:6297849/1‑76 (MQ=255) gCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTAttt < 2:5578113/76‑1 (MQ=255) aTTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCg > 1:5137609/1‑76 (MQ=255) tAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTc > 1:3313392/1‑76 (MQ=255) aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCa < 1:1196321/76‑1 (MQ=255) aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCa > 1:3472244/1‑76 (MQ=255) aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCa > 2:1281262/1‑76 (MQ=255) aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCa < 2:235036/76‑1 (MQ=255) aaaTCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCa > 1:5882386/1‑76 (MQ=255) tctcTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATaa < 1:100031/76‑1 (MQ=255) ctctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATaaa > 1:6102906/1‑76 (MQ=255) ctctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATaaa > 2:6689872/1‑76 (MQ=255) ctctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATaaa > 2:6196400/1‑76 (MQ=255) ctctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATaaa > 1:3840256/1‑76 (MQ=255) tctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAg < 1:7591290/76‑1 (MQ=255) ctAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAgg < 2:3952930/76‑1 (MQ=255) tAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGt > 1:5789295/1‑76 (MQ=255) aaaGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtt > 1:7767275/1‑76 (MQ=255) aaaGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtt > 2:1992181/1‑76 (MQ=255) aaGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGttt > 2:5746751/1‑76 (MQ=255) aaGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGttt > 2:3737660/1‑76 (MQ=255) aGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtttt < 1:3661938/76‑1 (MQ=255) aGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtttt < 2:3999644/76‑1 (MQ=255) aGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtttt > 1:5341240/1‑76 (MQ=255) aGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtttt < 2:3612698/76‑1 (MQ=255) aGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGtttt < 1:4306119/76‑1 (MQ=255) gTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTa > 1:6175508/1‑76 (MQ=255) tataCTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTAc > 1:3120704/1‑76 (MQ=255) aCTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTActct > 2:1745252/1‑76 (MQ=255) cTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCtt > 1:2726067/1‑76 (MQ=255) cTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCtt > 1:14345/1‑76 (MQ=255) ccAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCtttt > 1:4418361/1‑76 (MQ=255) ccAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCtttt < 2:2993519/76‑1 (MQ=255) ccAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCtttt > 2:2457402/1‑76 (MQ=255) aaCCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAg < 1:5210254/76‑1 (MQ=255) aaCCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAg < 2:1196834/76‑1 (MQ=255) | AACTATTATTTCACAATCAATCCCATCGAATATTTCATTAATATTTTTTGCAATTAAATCTCTAAAGTATACTCCAACCCCATAATATTTTAATTCTGAAAAAGATAGTAAATTGAAAACTATTTTCGTCATAAAGGTTTTACTCTTTTAG > REL606/2036827‑2036977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |