| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2056287 | 206 (0.840) | 48 (0.210) +CTTA |
16/142 | 11.0 | 14.4% | intergenic (‑191/+2) | cpsG/cpsB | phosphomannomutase/mannose‑1‑phosphate guanyltransferase |
| ? | REL606 | 4274785 = | 399 (1.630) | intergenic (+58/+473) | gltP/yjcO | glutamate/aspartate:proton symporter/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 399 total aligned reads displayed.
AAAACTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT > REL606/4274710‑4274842 | aaaaCTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGc > 2:7704124/1‑76 (MQ=255) aaaCTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGcc > 2:312874/1‑76 (MQ=255) aaaCTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGcc > 1:6548701/1‑76 (MQ=255) gCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTc > 2:7758857/1‑76 (MQ=255) gCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTc > 1:7089168/1‑76 (MQ=255) cGGATCAATAATTGAAGATTGCCGGGGATATCCGCCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCt < 2:7012223/76‑1 (MQ=255) cGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCt > 2:1866917/1‑76 (MQ=255) ggATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:4800849/76‑1 (MQ=255) ggATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:5871902/76‑1 (MQ=255) ggATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCtt < 2:2082028/76‑1 (MQ=255) gATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:32640/76‑1 (MQ=255) gATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTa > 1:3683745/1‑76 (MQ=255) gATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTa < 2:5726428/76‑1 (MQ=255) aTCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:6128842/1‑76 (MQ=255) aTCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTAt > 2:4295359/1‑76 (MQ=255) aTCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:5194337/76‑1 (MQ=255) tCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATc > 2:5357826/1‑76 (MQ=255) tCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATc > 1:4164119/1‑76 (MQ=255) tCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:1765932/76‑1 (MQ=255) cAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCa > 2:2595662/1‑76 (MQ=255) aataatTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg > 2:2992918/1‑76 (MQ=255) aataatTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg < 2:7332222/76‑1 (MQ=255) ataatTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 1:6410583/1‑76 (MQ=255) ataatTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 1:351110/1‑76 (MQ=255) aatTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 2:4406931/76‑1 (MQ=255) aatTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 2:3064148/1‑76 (MQ=255) atTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt > 1:5028581/1‑76 (MQ=255) atTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt > 2:3471261/1‑76 (MQ=255) atTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt > 2:4617016/1‑76 (MQ=255) atTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt > 2:1343589/1‑76 (MQ=255) ttGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa < 1:2223183/76‑1 (MQ=255) ttGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa < 2:2419457/76‑1 (MQ=255) ttGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa < 2:677083/76‑1 (MQ=255) ttGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa < 1:6654685/76‑1 (MQ=255) tGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 2:2642569/1‑76 (MQ=255) tGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:296350/1‑76 (MQ=255) tGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 2:4750615/1‑76 (MQ=255) tGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 2:49488/1‑76 (MQ=255) tGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 2:3692376/1‑76 (MQ=255) tGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 2:4242757/1‑76 (MQ=255) gAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg > 2:7483252/1‑76 (MQ=255) aaGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 2:6449978/1‑76 (MQ=255) aaGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc < 1:1044655/76‑1 (MQ=255) aaGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 2:3607894/1‑76 (MQ=255) aaGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:2501845/1‑76 (MQ=255) aGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc > 1:3067568/1‑76 (MQ=255) aGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc < 2:4829202/76‑1 (MQ=255) ttGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 2:1543003/1‑76 (MQ=255) ttGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa > 2:6521566/1‑76 (MQ=255) tcccGGGGATATCCCCCCGGCAATGTG‑TGAATGCCTGAGGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc < 2:5694183/74‑1 (MQ=21) tGCCGGGGATATCCACCGGGCAATGTG‑TGAATGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc < 2:6221262/76‑1 (MQ=255) tGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc > 2:4349591/1‑76 (MQ=255) tGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCAACGCCAGAc < 2:7181374/76‑1 (MQ=255) gCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa > 2:342753/1‑76 (MQ=255) ccGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg < 2:961999/76‑1 (MQ=255) ggggATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg > 1:7202561/1‑76 (MQ=255) gggATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAgcgc > 2:1058618/1‑76 (MQ=255) gATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa > 2:6625013/1‑76 (MQ=255) atatCCCCCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt < 1:3993299/76‑1 (MQ=255) atatCCCCCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt < 1:623957/76‑1 (MQ=255) atatCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt > 2:3261768/1‑76 (MQ=255) atatCCACCCCGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTACCAGGCCTCCGCCAGACAGCGCAAt < 2:7077684/76‑1 (MQ=18) tatCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa > 1:7789308/1‑76 (MQ=255) tatCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa > 1:4613876/1‑76 (MQ=255) atCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAg > 1:4320784/1‑76 (MQ=255) atCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAg > 1:1628879/1‑76 (MQ=255) atCCACCCGGAAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAg < 2:1393605/76‑1 (MQ=255) ccACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGcc > 2:3748998/1‑76 (MQ=255) cccccGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCt < 1:5703141/74‑1 (MQ=255) cccccGGCAAGGTG‑TAAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCt < 1:5969896/74‑1 (MQ=14) ccccGGGAATGTGTTAAATGCCTGATGGGCCGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCt < 2:5949530/75‑1 (MQ=14) ccccGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg < 1:3654802/75‑1 (MQ=255) cccGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTgt > 1:3884444/1‑75 (MQ=255) cGGCAATGTG‑TAAATGCCTGATGCGTCGTTTGCCGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAtt < 2:1639541/76‑1 (MQ=17) ggCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAttt < 2:2215615/76‑1 (MQ=255) gCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa < 2:5080647/76‑1 (MQ=255) cAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAg > 2:2533713/1‑76 (MQ=255) cAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAg > 2:5305491/1‑76 (MQ=255) cAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAg > 2:1931205/1‑76 (MQ=255) aaTGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGc > 2:2855833/1‑76 (MQ=255) aaTGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGc > 2:2005800/1‑76 (MQ=255) aTGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg > 2:5187327/1‑76 (MQ=255) aTGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg > 2:7597187/1‑76 (MQ=255) aTGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg > 1:6755551/1‑76 (MQ=255) aTGTG‑TGAATGCCTGATGCGACGCTTCCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg < 2:6099719/76‑1 (MQ=255) tgtg‑tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGt > 1:191243/1‑76 (MQ=255) gtg‑tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 2:5473897/1‑76 (MQ=255) gtg‑tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg < 1:5394911/76‑1 (MQ=255) tg‑tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa > 1:7377120/1‑76 (MQ=40) g‑tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt > 2:3980372/1‑58 (MQ=255) g‑tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa > 2:630686/1‑59 (MQ=255) tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtt > 2:838900/1‑76 (MQ=38) tgAATCCCGGAGGCGACGCTTGCCGCTTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtt < 2:6207156/76‑1 (MQ=11) gAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt > 1:1269619/1‑76 (MQ=35) gAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt > 2:1697977/1‑76 (MQ=35) aTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTg > 2:3855134/1‑76 (MQ=32) tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAc > 2:1209680/1‑45 (MQ=32) tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa > 1:744345/1‑54 (MQ=31) tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt < 2:6904600/76‑1 (MQ=31) tGCCTGAGGCGACTCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt < 1:7627897/76‑1 (MQ=9) | AAAACTGCGGATCAATAATTGAAGATTGCCGGGGATATCCACCCGGCAATGTG‑TGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT > REL606/4274710‑4274842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |