New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3893554 =NA (NA)330 (1.300) 116/148 0.1 NA noncoding (1/1443 nt) IS150 repeat region
?REL606 3904522 = NA (NA)noncoding (908/1542 nt) rrsC 16S ribosomal RNA

Only 100 of 357 total aligned reads displayed.

TGCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA  >  REL606/3893479‑3893627
                                                                           |                                                                         
 gCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTg                                                                          >  2:7947102/1‑76 (MQ=255)
 gCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTg                                                                          >  1:3136649/1‑76 (MQ=255)
  cACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGt                                                                         <  2:8345931/76‑1 (MQ=255)
  cACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGt                                                                         <  1:3760531/76‑1 (MQ=255)
   aCCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTa                                                                        >  2:5777704/1‑76 (MQ=255)
   aCCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTa                                                                        >  1:52623/1‑76 (MQ=255)
    ccAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTAc                                                                       >  2:8135798/1‑76 (MQ=255)
     cAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACt                                                                      >  2:3994484/1‑76 (MQ=255)
      aGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                                                     >  1:8361550/1‑76 (MQ=255)
      aGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                                                     <  2:4969613/76‑1 (MQ=255)
      aGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                                                     <  2:4224798/76‑1 (MQ=255)
      aGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTg                                                                     <  2:1971196/76‑1 (MQ=255)
        aTCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCa                                                                   <  2:3661722/76‑1 (MQ=255)
          cAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAcc                                                                 >  1:1052962/1‑76 (MQ=255)
          cAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAcc                                                                 >  2:7037009/1‑76 (MQ=255)
          cAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAcc                                                                 >  1:3635816/1‑76 (MQ=255)
           aaTTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCAccc                                                                <  1:7849560/76‑1 (MQ=255)
              ttGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCAtt                                                             >  2:6845967/1‑76 (MQ=255)
                 aaaTCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttg                                                          <  2:7559645/76‑1 (MQ=255)
                  aaTCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgt                                                         >  1:5743168/1‑76 (MQ=255)
                   aTCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgtt                                                        >  2:506039/1‑76 (MQ=255)
                    tCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgttg                                                       <  2:1747411/76‑1 (MQ=255)
                    ccccACCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTttgttg                                                       <  2:4480941/75‑1 (MQ=255)
                       cGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc                                                    <  1:7458561/76‑1 (MQ=255)
                        gCCAAACAGGGTTATCGAACTGGGTTTTCAGTACGAAATCTAACGCCTGACTGTACGGCACCCATTTTGTTGGACg                                                   >  1:2117571/1‑76 (MQ=37)
                         ccAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa                                                  >  1:8238445/1‑76 (MQ=255)
                          cAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGAt                                                 >  2:3819947/1‑76 (MQ=255)
                          cAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGAt                                                 >  1:6832472/1‑76 (MQ=255)
                           aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg                                                <  1:4497590/76‑1 (MQ=255)
                           aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg                                                >  2:7294977/1‑76 (MQ=255)
                           aaaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATg                                                <  1:1006730/76‑1 (MQ=255)
                            aaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa                                               <  2:1288315/76‑1 (MQ=255)
                            aaCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa                                               >  2:1003213/1‑76 (MQ=255)
                             aCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa                                              <  2:624999/76‑1 (MQ=255)
                             aCAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa                                              <  1:7607794/76‑1 (MQ=255)
                              cAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaaa                                             <  2:7100088/76‑1 (MQ=255)
                              cAGGGNTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGaaa                                             >  2:2784720/1‑76 (MQ=255)
                               aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt                                            >  1:2953313/1‑76 (MQ=255)
                               aGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt                                            >  1:6328945/1‑76 (MQ=255)
                                 ggTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATgg                                          <  1:6253194/76‑1 (MQ=255)
                                  gTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGa                                         <  1:5387893/76‑1 (MQ=255)
                                  gTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGa                                         >  1:1192685/1‑76 (MQ=255)
                                   ttATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                                        >  1:4812286/1‑76 (MQ=255)
                                   ttATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa                                        <  1:6220552/76‑1 (MQ=255)
                                    tATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt                                       >  1:6723969/1‑76 (MQ=255)
                                     aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa                                      >  2:7172762/1‑76 (MQ=255)
                                     aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa                                      <  1:6641822/76‑1 (MQ=255)
                                     aTCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGAACTGTAACCATTTTGTTGGACGATGAAAAGGAATa                                      >  1:4600164/1‑76 (MQ=37)
                                      tCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg                                     <  2:3038239/76‑1 (MQ=255)
                                      tCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAg                                     >  2:824736/1‑76 (MQ=255)
                                       cGAACTGGGTACTCAGGTCGAAATCTAACTCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc                                    <  1:4150759/76‑1 (MQ=255)
                                       cGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc                                    >  1:1384623/1‑76 (MQ=255)
                                       cGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGc                                    >  1:1725092/1‑76 (MQ=255)
                                         aaCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc                                  >  2:6151305/1‑76 (MQ=255)
                                          aCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc                                 >  2:2943189/1‑76 (MQ=255)
                                          aCTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc                                 >  2:5547738/1‑76 (MQ=255)
                                           cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                <  2:6547063/76‑1 (MQ=255)
                                           cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                <  1:5670536/76‑1 (MQ=255)
                                           cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                <  2:4628279/76‑1 (MQ=255)
                                           cTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                <  1:7328759/76‑1 (MQ=255)
                                            tGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa                               >  2:1154103/1‑76 (MQ=255)
                                            tGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa                               <  1:4049003/76‑1 (MQ=255)
                                            tGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa                               >  2:3379155/1‑76 (MQ=255)
                                             gggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa                              <  1:4974786/76‑1 (MQ=255)
                                             gggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa                              <  2:2445227/76‑1 (MQ=255)
                                             gggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa                              >  1:2601434/1‑76 (MQ=255)
                                             gggTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTaa                              >  1:330721/1‑76 (MQ=255)
                                              ggTAATCGGGTCGAAATCTAGCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat                             <  2:3562844/76‑1 (MQ=18)
                                               gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata                            >  1:7680823/1‑76 (MQ=255)
                                               gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata                            >  2:7601276/1‑76 (MQ=255)
                                               gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata                            >  1:2047001/1‑76 (MQ=255)
                                               gTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata                            >  1:1847626/1‑76 (MQ=255)
                                                tACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                           <  1:6011263/76‑1 (MQ=255)
                                                tACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                           <  2:3319533/76‑1 (MQ=255)
                                                  cTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGt                         <  1:7233220/76‑1 (MQ=255)
                                                      gttCGAAATCTAGCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaaa                     <  1:8109217/74‑1 (MQ=255)
                                                         cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGcc                  >  2:6019986/1‑76 (MQ=255)
                                                         cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGcc                  <  1:4288587/76‑1 (MQ=255)
                                                         cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGcc                  >  1:2823932/1‑76 (MQ=255)
                                                         cGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGcc                  >  1:2890853/1‑76 (MQ=255)
                                                          gAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCa                 >  1:3597998/1‑76 (MQ=255)
                                                           aaaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa                <  2:5166956/76‑1 (MQ=255)
                                                            aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaa               >  1:250124/1‑76 (MQ=255)
                                                             aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa              >  1:3075598/1‑76 (MQ=255)
                                                             aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa              <  1:6456751/76‑1 (MQ=255)
                                                               cTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATa            <  2:5253445/76‑1 (MQ=255)
                                                                 aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAcc          >  2:4803245/1‑76 (MQ=255)
                                                                 aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAcc          >  1:593746/1‑76 (MQ=255)
                                                                 aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAcc          >  2:1834493/1‑76 (MQ=255)
                                                                 aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAcc          >  2:563733/1‑76 (MQ=255)
                                                                    gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt       >  1:7966529/1‑76 (MQ=39)
                                                                    gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt       <  2:2413697/76‑1 (MQ=39)
                                                                    gCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt       >  2:2625871/1‑76 (MQ=39)
                                                                     ccAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCttt      <  2:209081/76‑1 (MQ=38)
                                                                      cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt     <  2:7679335/76‑1 (MQ=35)
                                                                      cAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt     <  1:5435439/76‑1 (MQ=35)
                                                                       aGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTg    >  2:142828/1‑76 (MQ=34)
                                                                        gACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGa   >  2:3198413/1‑76 (MQ=32)
                                                                        gACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGa   >  2:1277766/1‑76 (MQ=32)
                                                                        gACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGa   <  1:2462241/76‑1 (MQ=32)
                                                                           |                                                                         
TGCACCAGATCAATTTGAAATCCCGCCAAACAGGGTTATCGAACTGGGTACTCAGGTCGAAATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA  >  REL606/3893479‑3893627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.