| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2037392 | 133 (0.570) | 5 (0.020) | 4/136 | 20.2 | 3.7% | coding (739/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037686 | 138 (0.660) | coding (445/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2037311‑2037392‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattatcATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTATC < REL606/2037686‑2037612 CAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAAT > 2:4535070/1‑76CAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAAT > 2:3790880/1‑76CAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAAT < 1:5383703/76‑1CAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAAT < 1:6995580/76‑1 AATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATA > 1:3514312/1‑76 AATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATA < 2:1597928/76‑1 ATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATAT < 1:1076332/76‑1 TTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATT > 1:2617145/1‑76 TTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATT < 1:3659686/76‑1 TATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTA < 2:6054761/76‑1 TATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTA > 2:5259237/1‑76 TATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTA < 2:2347924/76‑1 TATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTA < 1:5421657/76‑1 ATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTAT < 1:1666383/76‑1 ATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTAT > 1:4540852/1‑76 TATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC > 2:4264542/1‑76 TATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC > 2:1515159/1‑76 TATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC > 2:2011938/1‑76 TATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC > 2:323563/1‑76 TATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC > 2:2944678/1‑76 ATTCTGAAGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCA > 2:2833209/1‑76 ATTCTGAAGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCA > 2:309764/1‑76 TTCTGAAGTTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCAT > 2:1907118/1‑76 TTGATTAATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTT > 2:3009808/1‑76 ATATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTC > 2:3562629/1‑76 ATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCAT > 1:6354112/1‑76 ATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCAT > 2:5414853/1‑76 ATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCAT > 2:355778/1‑76 ATTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCAT < 2:1516334/76‑1 TTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATT > 1:5958722/1‑76 TTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATT > 2:4659084/1‑76 TTATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATT > 1:3392226/1‑76 TATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTT < 2:2849722/76‑1 TATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTT > 2:259534/1‑76 TATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTT < 1:4745636/76‑1 TATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTT > 1:3438190/1‑76 TATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTT > 2:5726411/1‑76 ATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTA < 1:5273673/76‑1 ATCATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTA > 1:606707/1‑76 CATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTATC > 1:3113925/1‑76 CAATTATATAAATAAAATTTTCTTCAAAAAAATCAGTAGATTCTCCATTATTTTTTAAATTCTGAAGTTGATTAATATTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2037311‑2037392‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattatcATGTTGTGGATTATTTCTTTTCTTCAGCGTGGTTGGATATCTTATTTTTTCATTTTGATTTTAATCTCATTTATC < REL606/2037686‑2037612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |