| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2406673 | 266 (1.150) | 5 (0.020) | 4/138 | 20.4 | 1.9% | intergenic (+363/‑3) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/putative DNA modification enzyme; b2345_1 |
| ? | REL606 | = 2407104 | 280 (1.310) | pseudogene (44/462 nt) | yfdF | putative DNA modification enzyme; b2345_1 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2406593‑2406673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaCCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCTCA < REL606/2407104‑2407030 TCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAA > 2:2560214/1‑76TCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAA > 2:1416147/1‑76TCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAA < 2:5946221/76‑1TCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAA < 1:4746129/76‑1 CTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAAT > 1:6507011/1‑76 CTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAAT > 1:1410789/1‑76 CTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAAT < 2:4358463/76‑1 CTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAAT < 2:7324706/76‑1 CTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAAT < 1:2175630/76‑1 TAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATA < 2:5550740/76‑1 TAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATA < 1:2961571/76‑1 AAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAA < 2:6344396/76‑1 AAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAA > 2:6951966/1‑76 AAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAA > 2:5832164/1‑76 AAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAA < 1:6623115/76‑1 AAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAA > 2:1009778/1‑76 AAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAA > 1:2636613/1‑76 AAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAA > 2:2168332/1‑76 AATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAA > 2:4284065/1‑76 AATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAA < 2:5511499/76‑1 AATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAA < 2:4241284/76‑1 AATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAA > 2:3402981/1‑76 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA > 2:6724683/1‑76 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA > 2:6490766/1‑76 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA < 2:6414296/76‑1 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA < 1:4202808/76‑1 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA > 2:631897/1‑76 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA < 2:5943561/76‑1 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA > 2:568693/1‑76 ATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA > 2:854905/1‑76 TCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAACCAGGATCTCCATCATATATTT > 2:3266218/1‑76 GTAATATATATTTGTAACAAATCAATCAACATGGAATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCT > 2:4583125/1‑76 GTAATATATATTTGTAACAAATCAATCAACATGGAATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCT > 2:1120378/1‑76 ATATATATTTGTAACAAATCAATCAACATGGAATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAA > 2:2872483/1‑76 CAACATGGAATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATAT > 2:6521847/1‑76 tATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTC > 2:2450834/2‑76 ATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCT < 1:58529/76‑1 ATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCT > 2:665563/1‑76 ATAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCT < 2:6808946/76‑1 TAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTT < 2:4799228/76‑1 TAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTT < 2:4653797/76‑1 TAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTT > 1:5960118/1‑76 TAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTT < 2:88003/76‑1 TAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTT < 2:888923/76‑1 TAAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTT < 2:3860810/76‑1 AAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTC > 2:964828/1‑76 AAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTC > 1:3681948/1‑76 AAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTC > 2:7060103/1‑76 AAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTC > 2:1006809/1‑76 AAAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTC > 2:4199362/1‑76 AAACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCT > 2:2202661/1‑76 AACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCTC > 1:5825760/1‑76 AACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCTC < 1:7461893/76‑1 AACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCTC < 1:244500/76‑1 AACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCTC > 2:5476049/1‑76 ACCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCTCA > 2:6415854/1‑76 TCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGTAATATATATTTGTAACAAATCAATCAACATGGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2406593‑2406673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaCCAGGATCTCCATCATATATTTCTTTTAATGCGCTGAAGATCATTTCCTTGTTATTGATATCATGAGTCTTCTCA < REL606/2407104‑2407030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |