| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,032,893 | Δ21,285 bp | [manC]–[wcaJ] | 21 genes [manC], insB‑14, insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2032893 | 2054177 | 21285 | 187 [4] | [1] 182 | [manC]–[wcaJ] | [manC],insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2032892 | 4 (0.020) | 173 (0.810) | 102/148 | 0.2 | 98.6% | coding (1364/1425 nt) | manC | Mannose‑1‑phosphate guanylyltransferase |
| ? | REL606 | 2054178 = | 1 (0.000) | coding (494/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
Only 100 of 183 total aligned reads displayed.
TAAGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2032817‑2032892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCA > REL606/2054178‑2054252 TAAGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTA > 2:1693732/1‑76TAAGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTA > 1:5972302/1‑76TAAGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTA > 1:4221596/1‑76TAAGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTA < 1:749941/76‑1 AAGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTAT > 2:2327833/1‑76 AGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATT < 1:1886504/76‑1 AGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATT > 1:3323490/1‑76 CTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTAC > 2:2090022/1‑76 CTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTAC < 1:6555430/76‑1 TCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACG > 2:2951071/1‑76 TCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACG < 2:3896780/76‑1 TCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACG > 2:4412458/1‑76 TCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACG > 2:2908227/1‑76 CTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGG < 1:6425694/76‑1 CTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGG > 2:4689199/1‑76 CTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGG > 2:661205/1‑76 ACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAA > 2:3275323/1‑76 ACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAA > 2:6409965/1‑76 CCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAG < 2:2654566/76‑1 TATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTC > 2:6955442/1‑76 ATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCT > 1:1797580/1‑76 TCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTC > 1:4573138/1‑76 CAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCC < 1:5958043/76‑1 CAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCC < 2:2541785/76‑1 AATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCA < 1:499739/76‑1 AATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCA > 1:2161122/1‑76 TCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATC > 1:5330175/1‑76 TCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATC < 1:6186239/76‑1 CTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCA < 1:3043638/76‑1 CTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCA < 1:4309743/76‑1 TTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAG < 1:1483519/76‑1 TTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAG > 1:5488797/1‑76 TTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAG < 2:5957143/76‑1 TCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGC > 1:2689195/1‑76 CAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCA < 2:6735389/76‑1 AAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCAT < 1:776239/76‑1 AATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATT < 2:3602492/76‑1 ATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTT < 1:1612087/76‑1 ATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTT < 1:5837062/76‑1 TCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTG > 1:3672533/1‑76 AAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCC > 1:3986960/1‑76 AGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCG > 1:4983996/1‑76 AGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCG < 1:6864806/76‑1 GGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGG < 1:3185382/76‑1 GATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGC > 1:845089/1‑76 GATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGC < 1:2316317/76‑1 ATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCG > 1:3369486/1‑76 ATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGC < 2:986536/76‑1 ATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGC > 1:1273700/1‑76 ATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCACCAGCATTTGTTCGGCGGC > 2:4792750/1‑76 TCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCT < 2:5257175/76‑1 CATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTA < 1:3509715/76‑1 ATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAA < 2:610485/76‑1 CAGCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCC > 1:2786903/1‑76 GCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCC > 2:4259576/1‑76 GCAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCC < 2:2006514/76‑1 CAAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCG > 2:5632239/1‑76 AAGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGC > 1:1935424/1‑76 AGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCT < 2:5301039/76‑1 AGATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCT < 1:668765/76‑1 GATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTA < 2:4544207/76‑1 GATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTA > 1:6514302/1‑76 ATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTAC < 1:4839655/76‑1 ATAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCCCTAC > 1:3645832/1‑76 TAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCTGGCGGCTAAATCCCCCGCTACG > 2:3393696/1‑76 TAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACG < 1:2199386/76‑1 TAAGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACG < 1:5571210/76‑1 AGAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGC < 2:1147540/76‑1 GAACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCG < 1:4188254/76‑1 AACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGA > 1:966689/1‑76 AACCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACCGCGA > 2:6532526/1‑76 CCGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACC < 2:3416649/76‑1 CGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCA < 1:6012944/76‑1 CGGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCA < 1:4512245/76‑1 GGTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGCCGACTAAATCCCCCGCTACGGCGACCAT < 2:5934020/76‑1 GTCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATG < 2:5989988/76‑1 GTCCAAACTTCTATTATTACGCAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATG < 1:3526379/76‑1 TCCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGC < 2:4221596/76‑1 CCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCG > 1:6295536/1‑76 CCAAACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCG < 2:319752/76‑1 ACTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCCTTCGCctt > 2:4633693/1‑73 CTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGT < 2:539448/76‑1 CTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGT < 2:1731696/76‑1 CTTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGT > 1:6650217/1‑76 TTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTT > 1:1091264/1‑76 TTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTT > 1:1990615/1‑76 TTCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTT < 2:6570159/76‑1 TCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTA > 1:2824126/1‑76 TCTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTA < 2:1807607/76‑1 CTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTAT < 1:2903072/76‑1 CTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTAT < 2:5811427/76‑1 CTATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGAGCTTGTTAT > 1:1555854/1‑76 TATTATTACGGAAGCTTTCCATCCGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCAAGCGCTTGTTCTA > 2:4141275/1‑76 ATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAG < 1:107681/76‑1 ATTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGGTATAG > 1:6801712/1‑76 TTATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGC < 2:853813/76‑1 TATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCCAAATTCCCCGCTACGGCGACCATTTCCCTGCTATAGCC > 2:6235146/1‑76 ATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCA > 1:2873727/1‑76 ATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCA < 1:1394614/76‑1 ATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCA > 1:5004845/1‑76 TAAGCTCTACCATATCAATCTTCAAATCGAAGGATATCATCATCAGCAAGATAAGAACCGGTCCAAACTTCTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2032817‑2032892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCA > REL606/2054178‑2054252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |