| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,032,893 | Δ21,285 bp | [manC]–[wcaJ] | 21 genes [manC], insB‑14, insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2032893 | 2054177 | 21285 | 187 [4] | [1] 182 | [manC]–[wcaJ] | [manC],insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2032892 | 4 (0.020) | 173 (0.810) | 102/148 | 0.2 | 98.6% | coding (1364/1425 nt) | manC | Mannose‑1‑phosphate guanylyltransferase |
| ? | REL606 | 2054178 = | 1 (0.000) | coding (494/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
Only 100 of 182 total aligned reads displayed.
GCCCAGTCGTTAGAAACGCCGCCCGGTTTTGGGTCGTGGTATACGCCCACCACTTCAAACCCTAACCACGGCTGATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCAT > REL606/2054103‑2054253 | aagctctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattat > 2:2327833‑M2/76‑76 (MQ=255)aagctctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattat > 1:5996607‑M2/76‑76 (MQ=255) agctctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattatt > 1:3323490‑M2/75‑76 (MQ=255) agctctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattatt < 1:1886504‑M2/2‑1 (MQ=255) ctctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTAc > 1:6182094‑M2/73‑76 (MQ=255) ctctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTAc > 2:2090022‑M2/73‑76 (MQ=255) tctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACg > 2:2951071‑M2/72‑76 (MQ=255) tctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACg > 1:2975015‑M2/72‑76 (MQ=255) tctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACg < 2:3896780‑M2/5‑1 (MQ=255) ctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACgg > 1:2872809‑M2/71‑76 (MQ=255) ctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACgg < 1:6425694‑M2/6‑1 (MQ=255) ctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACgg > 1:3182832‑M2/71‑76 (MQ=255) ctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACgg > 2:4689199‑M2/71‑76 (MQ=255) ctaccatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACgg > 2:661205‑M2/71‑76 (MQ=255) accatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGaa > 1:5758995‑M2/69‑76 (MQ=255) accatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGaa > 2:6409965‑M2/69‑76 (MQ=255) accatatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGaa > 2:3275323‑M2/69‑76 (MQ=255) tatcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGctc > 2:6955442‑M2/65‑76 (MQ=255) atcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGctct > 1:1797580‑M2/64‑76 (MQ=255) atcaatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGctct < 1:5949746‑M2/13‑1 (MQ=255) caatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTcc < 2:2541785‑M2/15‑1 (MQ=255) aatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCa < 1:499739‑M2/16‑1 (MQ=255) aatcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCa > 1:2161122‑M2/61‑76 (MQ=255) atcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCTAt > 1:6687446‑M2/60‑76 (MQ=255) tcttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATc < 1:6186239‑M2/18‑1 (MQ=255) ttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAg < 1:1483519‑M2/20‑1 (MQ=255) ttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAg < 2:5957143‑M2/20‑1 (MQ=255) ttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAg < 2:3660069‑M2/20‑1 (MQ=255) ttcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAg > 1:5488797‑M2/57‑76 (MQ=255) tcaaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGc > 1:2689195‑M2/56‑76 (MQ=255) caaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCa < 2:6735389‑M2/22‑1 (MQ=255) caaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCa > 1:882579‑M2/55‑76 (MQ=255) aaatcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCAt < 1:776239‑M2/23‑1 (MQ=255) atcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCAttt < 1:1612087‑M2/25‑1 (MQ=255) tcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTg > 1:3672533‑M2/51‑76 (MQ=255) tcgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTg > 1:4014719‑M2/51‑76 (MQ=255) cgaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGt < 1:6574954‑M2/27‑1 (MQ=255) gaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTTTc > 2:158252‑M2/49‑76 (MQ=255) gaaggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTc > 2:175371‑M2/49‑76 (MQ=255) aggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCcg > 1:4983996‑M2/47‑76 (MQ=255) aggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCcg < 1:6864806‑M2/30‑1 (MQ=255) aggatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCcg < 2:27623‑M2/30‑1 (MQ=255) gatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCcggc < 1:2316317‑M2/32‑1 (MQ=255) gatatcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCcggc > 1:845089‑M2/45‑76 (MQ=255) atcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCggcggc < 2:986536‑M2/35‑1 (MQ=255) atcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCggcggc > 2:2920664‑M2/42‑76 (MQ=255) atcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCggcggc > 1:1273700‑M2/42‑76 (MQ=255) atcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCACCAGCATTTGTTCggcggc > 2:4792750‑M2/42‑76 (MQ=255) tcatcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCt < 2:5257175‑M2/36‑1 (MQ=255) atcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTaa < 2:610485‑M2/38‑1 (MQ=255) atcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTaa < 1:333146‑M2/38‑1 (MQ=255) atcatcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTaa > 2:2066166‑M2/39‑76 (MQ=255) atcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATc < 1:5333019‑M2/41‑1 (MQ=255) atcagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATc > 1:3450186‑M2/36‑76 (MQ=255) cagcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATccc > 1:2786903‑M2/34‑76 (MQ=255) gcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATccccc > 1:4549686‑M2/32‑76 (MQ=255) gcaagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATccccc > 2:4259576‑M2/32‑76 (MQ=255) caagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCg > 2:5632239‑M2/31‑76 (MQ=255) caagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCg > 1:4481814‑M2/31‑76 (MQ=255) aagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGc > 1:1935424‑M2/30‑76 (MQ=255) aagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGc > 2:3587005‑M2/30‑76 (MQ=255) aagataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGc > 2:4413664‑M2/30‑76 (MQ=255) agataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCt < 1:668765‑M2/48‑1 (MQ=255) gataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTa < 2:4544207‑M2/49‑1 (MQ=255) gataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTa > 1:6514302‑M2/28‑76 (MQ=255) ataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTAc < 1:4839655‑M2/50‑1 (MQ=255) ataagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCCCTAc > 1:3645832‑M2/27‑76 (MQ=255) taagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCTGGCGGCTAAATCCCCCGCTACg > 2:3393696‑M2/26‑76 (MQ=255) taagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACg < 1:2199386‑M2/51‑1 (MQ=255) taagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACg < 1:5571210‑M2/51‑1 (MQ=255) taagaaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACg < 1:5205206‑M2/51‑1 (MQ=255) aaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGa < 1:4188365‑M2/55‑1 (MQ=255) aaccggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACCGCGa > 2:6532526‑M2/22‑76 (MQ=255) accggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGAc < 1:4658502‑M2/56‑1 (MQ=255) ggtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGCCGACTAAATCCCCCGCTACGGCGACCAt < 2:5934020‑M2/59‑1 (MQ=255) gtccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATg < 2:5989988‑M2/60‑1 (MQ=255) gtccaaacttctattaTTACGCAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATg < 1:3526379‑M2/60‑1 (MQ=255) tccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATgc < 2:4221596‑M2/61‑1 (MQ=255) ccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATgcg < 2:319752‑M2/62‑1 (MQ=255) ccaaacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATgcg > 1:6295536‑M2/15‑76 (MQ=255) aacttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGCCTAAATCCCCCGCTACGGCGACCATGCGCtt < 2:5374344‑M2/65‑1 (MQ=255) acttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACccttcgcctt > 2:4633693‑M2/11‑73 (MQ=255) acttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTg < 2:1066978‑M2/66‑1 (MQ=255) cttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGt < 2:539448‑M2/67‑1 (MQ=255) ttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGtt > 1:1990615‑M2/9‑76 (MQ=255) ttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGtt > 1:1091264‑M2/9‑76 (MQ=255) ttctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGtt < 2:6570159‑M2/68‑1 (MQ=255) tctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTta > 1:2824126‑M2/8‑76 (MQ=255) ctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTtat < 2:5811427‑M2/70‑1 (MQ=255) ctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTtat < 1:2903072‑M2/70‑1 (MQ=255) ctattaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGAGCTTGTtat > 1:1555854‑M2/7‑76 (MQ=255) tattaTTACGGAAGCTTTCCATCCGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCAAGCGCTTGTtcta > 2:4141275‑M2/6‑76 (MQ=255) attaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGttatac > 2:1962256‑M2/5‑75 (MQ=255) attaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAg < 1:107681‑M2/72‑1 (MQ=255) attaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAg < 1:31912‑M2/72‑1 (MQ=255) attaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGGTATAg > 1:6801712‑M2/5‑76 (MQ=255) ttaTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGc < 2:853813‑M2/73‑1 (MQ=255) taTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCCAAATTCCCCGCTACGGCGACCATTTCCCTGCTATAGcc > 2:6235146‑M2/3‑76 (MQ=255) aTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCa < 1:1394614‑M2/75‑1 (MQ=255) aTTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCa > 1:3711506‑M2/2‑76 (MQ=255) | GCCCAGTCGTTAGAAACGCCGCCCGGTTTTGGGTCGTGGTATACGCCCACCACTTCAAACCCTAACCACGGCTGATTACGGAAGCTCTCCATCAGCATTTGTCCGGCGGCTAAATCCCCCGCTACGGCGACCATGCGCTTGTTATAGCCAT > REL606/2054103‑2054253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |