| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1219463 = | 149 (0.940) | 3 (0.020) | 3/138 | 17.9 | 2.0% | intergenic (+101/‑299) | ymgF/ycgH | hypothetical protein/predicted protein; b4491 |
| ? | REL606 | 1219727 = | 153 (1.050) | intergenic (+365/‑35) | ymgF/ycgH | hypothetical protein/predicted protein; b4491 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACTCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1219543‑1219463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaggAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTT > REL606/1219727‑1219800 AACTCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACA > 1:1208380/1‑76AACTCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACA > 1:1516448/1‑76AACTCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACA > 2:1218032/1‑76AACTCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACA > 1:982111/1‑76 TCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCA > 2:3352003/1‑76 TCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCA > 1:261567/1‑76 TCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCA > 1:3212293/1‑76 CTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAG < 1:1444857/76‑1 CTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAG < 1:477695/76‑1 CTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAG > 1:539349/1‑76 TTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGG > 2:3211375/1‑76 TTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGG < 2:2321401/76‑1 TTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGG < 1:351253/76‑1 TGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGGAATGTTTGTTAATC < 2:1701270/76‑1 ATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGGAATGTTTGTTAATCCAATG < 2:2113118/76‑1 AGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGGAATGTTTGTTAATCCAATGAA < 2:509772/76‑1 ACCAGGAATGTTTGTTAATCCAATGAATGGATGGATAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGG > 1:1763083/1‑76 CCAGGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGA < 2:3366051/76‑1 CCAGGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGA > 1:1403103/1‑76 CAGGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGAC > 2:2701105/1‑76 CAGGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGAC > 2:2472148/1‑76 AGGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACT < 2:2070357/76‑1 AGGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACT > 1:4882006/1‑76 AGGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACT < 2:964345/76‑1 GGAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTT < 2:3759511/76‑1 AACTCTTCGACATCAAAATTGTTAATAGTTGCGATGAGGATTATTTCGGTGATATATAAAAACAACCGTGATAACACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1219543‑1219463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaggAATGTTTGTTAATCCAATGAATGGATGGTTAATCTATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTT > REL606/1219727‑1219800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |