| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1219463 = | 149 (0.940) | 3 (0.020) | 3/138 | 17.9 | 2.0% | intergenic (+101/‑299) | ymgF/ycgH | hypothetical protein/predicted protein; b4491 |
| ? | REL606 | 1219727 = | 153 (1.050) | intergenic (+365/‑35) | ymgF/ycgH | hypothetical protein/predicted protein; b4491 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 152 total aligned reads displayed.
GCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAA > REL606/1219388‑1219538 | gCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAAcc < 1:3148328/76‑1 (MQ=255) ggCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCt > 1:3374358/1‑76 (MQ=255) ggCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCt > 1:2465835/1‑76 (MQ=255) ggCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCt > 2:599277/1‑76 (MQ=255) ggCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCt < 2:4882032/76‑1 (MQ=255) ggCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCt > 1:978520/1‑76 (MQ=255) gCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTg < 2:711813/76‑1 (MQ=255) cTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTgg < 1:3370486/76‑1 (MQ=255) tGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGgt > 2:3615001/1‑76 (MQ=255) gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGgtg < 1:850447/76‑1 (MQ=255) gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGgtg > 1:4333270/1‑76 (MQ=255) gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGgtg > 2:4947758/1‑76 (MQ=255) gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGgtg < 1:4153437/76‑1 (MQ=255) gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGgtg < 2:2065315/76‑1 (MQ=255) gAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGgtg > 2:4747138/1‑76 (MQ=255) aTGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGtt > 2:25179/1‑76 (MQ=255) aTGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGtt < 2:1026905/76‑1 (MQ=255) tGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTa > 2:665049/1‑76 (MQ=255) tGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTa > 2:1078583/1‑76 (MQ=255) gggTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTAt > 1:532419/1‑76 (MQ=255) gggTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTAt > 2:548692/1‑76 (MQ=255) gggTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTAt > 2:4372340/1‑76 (MQ=255) ggTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATc < 1:345412/76‑1 (MQ=255) ggTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATc < 2:3041572/76‑1 (MQ=255) gTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCa < 1:4825322/76‑1 (MQ=255) tGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACg > 1:1815398/1‑76 (MQ=255) tGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACg < 2:749742/76‑1 (MQ=255) tGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACg > 2:4227581/1‑76 (MQ=255) tGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACg > 1:1293807/1‑76 (MQ=255) tGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACg > 2:4204759/1‑76 (MQ=255) gCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACgg > 1:1756590/1‑76 (MQ=255) cTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGgt < 2:4588698/76‑1 (MQ=255) cTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGgt > 2:1648971/1‑76 (MQ=255) gCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGgttgt < 1:4641999/76‑1 (MQ=255) cAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGgttgtt < 1:4138439/76‑1 (MQ=255) aGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGttt < 1:2761022/76‑1 (MQ=255) aGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGttt < 1:3999366/76‑1 (MQ=255) gAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTta < 2:4722903/76‑1 (MQ=255) gAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTta > 2:2523064/1‑76 (MQ=255) aaCGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTtat > 2:1629660/1‑76 (MQ=255) aaCGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTtat < 1:3200160/76‑1 (MQ=255) aaCGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTtat > 1:3098793/1‑76 (MQ=255) aCGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTtata > 2:3998977/1‑76 (MQ=255) cGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTtatat < 2:3857798/76‑1 (MQ=255) gCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTtatata < 2:1933928/76‑1 (MQ=255) gCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTtatata < 2:1500499/76‑1 (MQ=255) ccTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTatatat < 1:2022339/76‑1 (MQ=255) ccTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTatatat < 1:3971649/76‑1 (MQ=255) cTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATc < 2:3494943/76‑1 (MQ=255) ggATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCAc < 1:1069377/76‑1 (MQ=255) aTCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCAACg < 1:2481850/76‑1 (MQ=255) cATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGaa < 2:5116210/76‑1 (MQ=255) cATTGAAGGAAAGGCATTATTGCGCAAATAGATGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGaa > 2:3963533/1‑76 (MQ=255) ttGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaat < 1:1035865/76‑1 (MQ=255) tGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaata < 1:2232643/76‑1 (MQ=255) tGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaata < 2:2785350/76‑1 (MQ=255) gAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaataa > 2:215610/1‑76 (MQ=255) gAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaataa < 2:3228395/76‑1 (MQ=255) aaGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaataat > 1:4403334/1‑76 (MQ=255) aaGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaataat > 2:4359418/1‑76 (MQ=255) aaGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaataat > 2:2125796/1‑76 (MQ=255) aaGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAaataat < 2:2313113/76‑1 (MQ=255) aaGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACAGAaataat < 1:1347845/76‑1 (MQ=255) gAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCt < 2:3522539/76‑1 (MQ=255) gAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCt < 2:1449310/76‑1 (MQ=255) gAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCt < 2:3025347/76‑1 (MQ=255) ggCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATc < 1:2848320/76‑1 (MQ=255) ggCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATc < 1:2853637/76‑1 (MQ=255) ggCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATc > 1:1320913/1‑76 (MQ=255) cATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGc > 1:4271029/1‑76 (MQ=255) attattGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCa > 1:1343780/1‑76 (MQ=255) ttattGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCaa < 2:3829105/76‑1 (MQ=255) ttattGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCaa > 1:3690735/1‑76 (MQ=255) tattGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAAc > 2:278075/1‑76 (MQ=255) gcgcAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTAtt < 1:615146/76‑1 (MQ=255) gcAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTaa < 2:818165/76‑1 (MQ=255) gcAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTaa < 1:2244884/76‑1 (MQ=255) cAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAAc > 1:2054340/1‑76 (MQ=255) cAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAAc < 2:4914256/76‑1 (MQ=255) cAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAAc < 2:1114216/76‑1 (MQ=255) cAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAAc < 1:1236898/76‑1 (MQ=255) aaTAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACaa < 2:4018416/76‑1 (MQ=255) aaTAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACaa > 2:4781269/1‑76 (MQ=255) tAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAAtt > 2:919571/1‑76 (MQ=255) tAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAAtt > 2:4627515/1‑76 (MQ=255) tAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAAtt < 2:2892488/76‑1 (MQ=255) gTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAAtttt > 1:2768386/1‑76 (MQ=255) gTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAAtttt > 1:1980418/1‑76 (MQ=255) gTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAAtttt > 2:1318954/1‑76 (MQ=255) ttGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTg < 2:2947694/76‑1 (MQ=255) tGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGa > 1:4357780/1‑76 (MQ=255) tGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGa > 1:1131766/1‑76 (MQ=255) gTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGAt < 1:1342637/76‑1 (MQ=255) gTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGAt < 2:690031/76‑1 (MQ=255) cAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGt > 1:899278/1‑76 (MQ=255) aaCCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTc > 2:5018250/1‑76 (MQ=255) aCCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCg < 1:3466196/76‑1 (MQ=255) aCCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCg < 2:82640/76‑1 (MQ=255) ccTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGaa > 1:351253/1‑76 (MQ=255) ccTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGaa > 2:2321401/1‑76 (MQ=255) | GCGGCTGAATGGGTTGCTGGCAGTGAACGCCTGGATCATTGAAGGAAAGGCATTATTGCGCAAATAGTTGTCAACCCTGGTGTTATCACGGTTGTTTTTATATATCACCGAAATAATCCTCATCGCAACTATTAACAATTTTGATGTCGAA > REL606/1219388‑1219538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |