| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2037696 | 103 (0.650) | 3 (0.020) | 3/134 | 17.6 | 2.9% | coding (435/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037796 | 110 (0.780) | coding (335/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2037614‑2037696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taataatgAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTAACAC < REL606/2037796‑2037722 TAAATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGAT > 1:2461377/1‑76TAAATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGAT > 2:129402/1‑76 AAATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATA < 2:657153/76‑1 AAATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATA > 1:5077568/1‑76 AATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAA < 1:4649521/76‑1 AATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAA < 1:4687662/76‑1 ATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAAT > 2:3492934/1‑76 ATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAAT < 1:3725911/76‑1 GAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAA < 1:2848775/76‑1 GAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAA < 1:5082225/76‑1 GAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAA > 2:811479/1‑76 AGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAAT < 1:3328195/76‑1 GATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATG > 1:4451776/1‑76 ACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTAT > 2:3146624/1‑76 AAGAAAAGAAATAATCCACAACATGATAATAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGA > 2:3594026/1‑76 TGATAATAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATA > 2:776815/1‑76 TAATAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTT < 2:4802995/76‑1 AATAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTC > 2:34974/1‑76 TAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTA < 2:634074/76‑1 TAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTA < 2:1656448/76‑1 TAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTA < 2:1431012/76‑1 TAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTA < 1:3741079/76‑1 TAATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTA < 1:3711942/76‑1 AATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTAA > 2:4672381/1‑76 AATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTAA < 2:4057132/76‑1 AATGAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTAA < 2:1305519/76‑1 GAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTAACAC > 2:567003/1‑76 GAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTAACAC > 2:976718/1‑76 TAAATGAGATTAAAATCAAAATGAAAAAATAAGATATCCAACCACGCTGAAGAAAAGAAATAATCCACAACATGATAATAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2037614‑2037696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taataatgAGCGCGGAGGCGGAGTAATTTCAGCGTTATTTGTATTACTGAATGTTGATGTACTTGTTTTAATATTTCTAACAC < REL606/2037796‑2037722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |