| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2037696 | 103 (0.650) | 3 (0.020) | 3/134 | 17.6 | 2.9% | coding (435/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037796 | 110 (0.780) | coding (335/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 123 total aligned reads displayed.
GTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACAAATTAAAAAA > REL606/2037722‑2037870 | gtgtTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTc < 2:567003/76‑1 (MQ=255) ttAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCatt > 2:1305519/1‑76 (MQ=255) ttAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCatt < 2:4672381/76‑1 (MQ=255) ttAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCatt > 2:4057132/1‑76 (MQ=255) tAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCatta > 2:1431012/1‑76 (MQ=255) tAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCatta > 2:634074/1‑76 (MQ=255) tAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCatta > 2:1656448/1‑76 (MQ=255) tAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCatta > 1:3741079/1‑76 (MQ=255) gAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCattatt < 2:34974/76‑1 (MQ=255) aaaTATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCAttatta > 2:4802995/1‑76 (MQ=255) tatTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTATCa < 2:776815/76‑1 (MQ=255) tatTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCa > 2:3059453/1‑76 (MQ=255) atTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAg > 1:4132136/1‑76 (MQ=255) atTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAg < 2:1106417/76‑1 (MQ=255) atTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAg < 1:4613650/76‑1 (MQ=255) tAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGca > 1:1029584/1‑76 (MQ=255) aaaaCAAGTACATCAACATTCAGTAATACAAATAACGCTTAAATTACTCCGCCTCCGCGCTCATTATTACCAGcaa < 2:1210752/76‑1 (MQ=255) aaaaCAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGcaa < 1:3115138/76‑1 (MQ=255) aaCAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGcaaca > 1:4797282/1‑76 (MQ=255) aaCAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGcaaca > 1:1565861/1‑76 (MQ=255) aCAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGcaacaa < 1:4440911/76‑1 (MQ=255) cAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACaaa < 1:2322912/76‑1 (MQ=255) cAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACaaa < 1:3269779/76‑1 (MQ=255) aaGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAAt < 1:4519355/76‑1 (MQ=255) aGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATa < 2:1331037/76‑1 (MQ=255) gTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATaa < 2:3372269/76‑1 (MQ=255) gTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATaa > 1:4482541/1‑76 (MQ=255) tACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAg > 1:2813515/1‑76 (MQ=255) aCATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGc > 1:3418976/1‑76 (MQ=255) cATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGcc < 1:262550/76‑1 (MQ=255) aTCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCt > 1:71004/1‑76 (MQ=255) cAACATTCAGTAATACAAATAGCGCTGAAATTCCTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGt < 2:1895595/76‑1 (MQ=255) cAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGt > 1:3487398/1‑76 (MQ=255) cAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGt > 2:4627467/1‑76 (MQ=255) cAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGt > 1:2712654/1‑76 (MQ=255) cAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGt > 1:1979781/1‑76 (MQ=255) aCATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTAt > 1:3580249/1‑76 (MQ=255) aCATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTAt < 1:2969609/76‑1 (MQ=255) cATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTAtt > 1:4216202/1‑76 (MQ=255) cATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTAtt < 2:4252407/76‑1 (MQ=255) cATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTAtt > 2:2499981/1‑76 (MQ=255) ttCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTaa < 1:129402/76‑1 (MQ=255) tCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTaaa < 2:2350823/76‑1 (MQ=255) tCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTaaa < 1:2240246/76‑1 (MQ=255) cAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAAt < 1:3538723/76‑1 (MQ=255) cAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAAt < 1:3801050/76‑1 (MQ=255) aGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATa > 2:3904612/1‑76 (MQ=255) gTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATAc > 1:3998332/1‑76 (MQ=255) aaTACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGt > 2:2856072/1‑76 (MQ=255) aTACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTa < 2:1310961/76‑1 (MQ=255) tACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTAt < 2:4976565/76‑1 (MQ=255) tACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTAt < 2:4976807/76‑1 (MQ=255) tACAAATAACCCTGAAATTACTCCGCCTCCGCGCTCATTATTACCATCATCAAATAAGCCTGTATTAAATACGTAt < 2:3858145/76‑1 (MQ=255) aCAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATg < 2:3437647/76‑1 (MQ=255) aCAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATg < 1:188258/76‑1 (MQ=255) aaaTAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGtt < 1:271840/76‑1 (MQ=255) aaaTAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGtt > 1:2138541/1‑76 (MQ=255) aaTAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTta > 1:3070141/1‑76 (MQ=255) tAACGCTGAAATTCCTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtata < 1:3604882/76‑1 (MQ=255) tAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtata < 2:4347598/76‑1 (MQ=255) tAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtata > 1:3414713/1‑76 (MQ=255) aaCGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatat > 1:628878/1‑76 (MQ=255) aaCGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatat < 1:1284831/76‑1 (MQ=255) aaCGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatat < 1:641985/76‑1 (MQ=255) aCGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatata < 2:1462498/76‑1 (MQ=255) aCGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatata < 1:1735092/76‑1 (MQ=255) aCGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatata < 1:439443/76‑1 (MQ=255) aCGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAACAACAAATAAGCCTGTATTAAATACGTATGTtatata < 1:1273508/76‑1 (MQ=255) gCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatatata < 2:2225732/76‑1 (MQ=255) gCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTtatatata < 2:5053428/76‑1 (MQ=255) cTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataa > 2:2915132/1‑76 (MQ=255) cTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataa < 1:1904094/76‑1 (MQ=255) cTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataa > 1:1924772/1‑76 (MQ=255) cTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataa < 2:4117085/76‑1 (MQ=255) tGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataat > 2:1117543/1‑76 (MQ=255) tGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataat < 1:1241385/76‑1 (MQ=255) tGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataat > 1:1827961/1‑76 (MQ=255) tGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataat < 2:1730367/76‑1 (MQ=255) tGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataat < 1:4811517/76‑1 (MQ=255) tGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataat < 1:4983172/76‑1 (MQ=255) gAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataata < 1:362523/76‑1 (MQ=255) gAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataata < 1:1601771/76‑1 (MQ=255) gAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATataata > 1:166226/1‑76 (MQ=255) aaaTTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATAtaataa > 2:3361884/1‑76 (MQ=255) aaaTTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATAtaataa < 2:2509426/76‑1 (MQ=255) aaaTTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATAtaataa < 2:4550194/76‑1 (MQ=255) aTTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAAtt < 2:3745886/76‑1 (MQ=255) aCTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTa > 2:3456840/1‑76 (MQ=255) aCTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTa > 1:3580101/1‑76 (MQ=255) ctccgcctccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTaa < 1:95943/76‑1 (MQ=255) tccgcctccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTaaa < 2:3557234/76‑1 (MQ=255) ccgcctccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAAc > 1:999180/1‑76 (MQ=255) gcctccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACaa < 1:3938148/76‑1 (MQ=255) gcctccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACaa < 2:4451776/76‑1 (MQ=255) cctccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACaaa < 2:3126913/76‑1 (MQ=255) ctccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACAAAt > 2:3773199/1‑76 (MQ=255) tccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACAAAtt < 1:1495959/76‑1 (MQ=255) ccgcGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACAAATTa > 1:622516/1‑76 (MQ=255) cgcgCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACAAATTaa > 2:3721910/1‑76 (MQ=255) cgcTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACAAATTaaaa < 1:2967200/76‑1 (MQ=255) | GTGTTAGAAATATTAAAACAAGTACATCAACATTCAGTAATACAAATAACGCTGAAATTACTCCGCCTCCGCGCTCATTATTACCAGCAACAAATAAGCCTGTATTAAATACGTATGTTATATATAATAATTCTAAACAAATTAAAAAA > REL606/2037722‑2037870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |