New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2103888 = | 0 (0.000) | 47 (0.470) | 29/96 | 3.6 | 95.0% | coding (155/216 nt) | ECB_01992 | hypothetical protein |
? | REL606 | = 2103891 | 5 (0.050) | coding (158/216 nt) | ECB_01992 | hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. |
Only 100 of 116 total aligned reads displayed.
TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103988‑2103888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggct‑ggctgGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCA < REL606/2103891‑2103818 TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCT > 1:2907580/1‑76 TTTTTTAGCGATGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGG > 2:1463678/1‑76 TTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCT < 2:773689/76‑1 TTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCT > 2:57666/1‑76 TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 2:2274043/1‑76 TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG < 2:4468145/76‑1 TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 1:409371/1‑76 TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:2042404/1‑76 TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:48570/1‑76 TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:4346222/1‑76 TAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGC > 2:188525/1‑76 AGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCT < 2:3198249/76‑1 AGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCGGGCTGGCTGGCT > 1:357826/1‑76 GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 2:2750648/76‑1 GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 1:3020389/76‑1 TGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGG > 1:2629739/1‑76 GTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGC > 2:1440700/1‑76 TTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCT < 1:508590/76‑1 GCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGG > 1:4139751/1‑76 CTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGgt > 1:3401604/1‑74 CTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT < 2:577585/76‑1 CTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT < 2:1425456/76‑1 TTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTG > 1:3056103/1‑76 TTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTG < 1:1623540/76‑1 TTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTG > 2:655141/1‑76 TTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGG < 1:4305845/76‑1 TTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGG > 2:4040409/1‑76 TTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGG > 2:2410368/1‑76 TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCCGGC > 2:1963632/1‑76 TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGGTGGCT > 1:2771397/1‑76 TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT < 2:3361458/76‑1 TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCCGGCT > 1:4728089/1‑76 TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTCGCTGGCT > 2:3483686/1‑76 GTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCT < 1:3523164/76‑1 GTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCT < 2:4331466/76‑1 TATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGGT‑GGgcg > 2:3108631/1‑73 TATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTG < 2:228022/76‑1 ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGG < 1:3868447/76‑1 ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGG < 1:1704249/76‑1 TAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGGTGGg > 1:2554879/1‑75 TAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGT < 2:4464927/76‑1 TAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGT < 2:482685/76‑1 AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGGTGGGTGTG > 2:5123620/1‑76 AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTG < 1:4363621/76‑1 AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTG < 1:2375925/76‑1 AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTG < 1:3271580/76‑1 GGGCAATTATTGCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAA < 1:3673894/76‑1 GGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAA < 1:1319238/76‑1 AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCT < 2:477989/76‑1 AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCT < 1:3992364/76‑1 ATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTA < 1:3512633/76‑1 TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAA < 1:1876437/76‑1 TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAA < 2:2700662/76‑1 TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAA < 2:4860394/76‑1 TATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGGTGGGCGGGCGGGGAAATCTAA > 1:1833604/1‑76 TATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAAT < 2:1512808/76‑1 ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATG < 1:699995/76‑1 TTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGC < 1:2942993/76‑1 CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAA < 2:3498552/76‑1 GTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAAT < 1:4577624/76‑1 AGTACAAAATCAACATTCACTCCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTT < 2:2689426/76‑1 CAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACC < 2:48304/76‑1 TCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 2:485500/76‑1 TCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 1:4038823/76‑1 TCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 1:4562360/76‑1 CCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTA < 2:1443633/76‑1 CCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTA < 2:2929031/76‑1 CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTAT < 1:4997836/76‑1 ACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATA < 2:3541791/76‑1 ACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATA < 2:1437467/76‑1 CACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGA < 2:3205442/76‑1 ACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAA < 2:3189164/76‑1 CACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAG < 2:513781/76‑1 CTGTCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCA < 1:1794287/76‑1 TGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAA < 1:4016823/76‑1 GCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATA < 1:435941/76‑1 GGCTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACG < 1:58030/76‑1 CTGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAA < 1:2729740/76‑1 TGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATTTAATGCAAAATTCACCCCCTTTTATTCGAAGTCAATAAAGAAG > 1:1018141/1‑76 TGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAG > 1:844290/1‑76 TGGCTGGCTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAG > 1:5029547/1‑76 TGGCTGGCTGGCT‑GGCTGGCTGTGAAAACTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGT > 1:2372481/1‑76 CTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTT < 2:2747000/76‑1 CTGGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTT > 1:3734313/1‑76 GGCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCA > 2:3585824/1‑76 GCTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCAT < 2:3073690/76‑1 CTGGCT‑GGCTTGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT < 1:2209080/76‑1 CTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT > 1:1652890/1‑76 CTGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT < 1:3086476/76‑1 TGGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTG < 2:3069000/76‑1 GGCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT < 2:3770940/76‑1 GCT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTA < 1:605190/76‑1 CT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTAT < 1:3792428/76‑1 CT‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTAT > 1:2225924/1‑76 T‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 1:3147667/76‑1 T‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA > 2:1092947/1‑76 T‑GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA > 2:2912870/1‑76 GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG > 1:2708202/1‑76 GCTGGCTGTTAAATCTAATGCAAATTTCGCCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTAGAGC < 2:263999/76‑1 GCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGC < 1:1173363/76‑1 TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT‑GGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103988‑2103888 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggct‑ggctgGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCA < REL606/2103891‑2103818 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |