Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	REL606	2,009,951	(GCA)3→2	intergenic (‑81/+23)	yeeX ← / ← yeeA	hypothetical protein/conserved inner membrane protein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	2009944	2009946	3	11 [0]	[0] 12	yeeX/yeeA	hypothetical protein/conserved inner membrane protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2009947 =	0 (0.000)	10 (0.510)	10/136	0.9	100%	intergenic (‑77/+29)	yeeX/yeeA	hypothetical protein/conserved inner membrane protein
	?	REL606	= 2009943	0 (0.000)					intergenic (‑73/+33)	yeeX/yeeA	hypothetical protein/conserved inner membrane protein

CATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCA  >  REL606/2009875‑2010018                                                                     |                                                                            cATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAagcagca                                                                      <  1:331373‑M2/76‑8 (MQ=255)   tAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAagcagcaag                                                                    >  1:193092‑M2/1‑67 (MQ=255)                     aTGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAagcagcaagatgattctgaagttcagg                                                  >  1:592929‑M2/1‑49 (MQ=255)                                   tttCACTATCATACCCTTTATCCTTGCTGAATCGAagcagcaagatgattctgaagttcaggaattatttgcgcaa                                    >  2:29625‑M2/1‑35 (MQ=255)                                            cATACCCTTTATCCTTGCTGAATCGAagcagcaagatgattctgaagttcaggaattatttgcgcaaggcccggca                           >  1:664224‑M2/1‑26 (MQ=255)                                              tACCCTTTATCCTTGCTGAATCGAagcagcaagatgattctgaagttcaggaattatttgcgcaaggcccggcaaa                         <  2:566191‑M2/76‑53 (MQ=255)                                                     tATCCTTGCTGAATCGAagcagcaagatgattctgaagttcaggaattatttgcgcaaggcccggcaaatcagatt                  <  2:239502‑M2/76‑60 (MQ=255)                                                       tCCTTGCTGAATCGAagcagcaagatgattctgaagttcaggaattatttgcgcaaggcccggcaaatcagattcg                >  1:4803‑M2/1‑15 (MQ=255)                                                          ttGCTGAATCGAagcagcaagatgattctgaagttcaggaattatttgcgcaaggcccggcaaatcagattcgata             <  1:154598‑M2/76‑65 (MQ=255)                                                                  tCGAagcagcaagatgattctgaagttcaggaattatttgcgcaaggcccggcaaatcagattcgatagcaactca     <  1:642182‑M2/76‑73 (MQ=255)                                                                     aagcagcaagatgattctgaagttcaggaattatttgcgcaaggcccggcaaatcagattcgatagcaactcaagc  <  1:666212‑M2/76‑76 (MQ=255)                                                                     |                                                                            CATAGCTGCCGCAGATGACAATGCTTTTATCCCTTTTCACTATCATACCCTTTATCCTTGCTGAATCGAAGCAGCAGCAAGATGATTCTGAAGTTCAGGAATTATTTGCGCAAGGCCCGGCAAATCAGATTCGATAGCAACTCA  >  REL606/2009875‑2010018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.