| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,619,789 | (GAC)4→3 | coding (2309‑2311/2340 nt) | yhjN ← | regulator of cellulose synthase, cyclic di‑GMP binding |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3619780 | 3619782 | 3 | 46 [0] | [0] 45 | yhjN | regulator of cellulose synthase, cyclic di‑GMP binding |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3619783 = | 0 (0.000) | 39 (1.050) | 35/132 | 0.1 | 100% | coding (2317/2340 nt) | yhjN | regulator of cellulose synthase, cyclic di‑GMP binding |
| ? | REL606 | = 3619779 | 0 (0.000) | coding (2321/2340 nt) | yhjN | regulator of cellulose synthase, cyclic di‑GMP binding | |||||
TTCTGCTGGCGGTGCTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3619866‑3619783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgtcgtcTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTGGCTGCCT < REL606/3619779‑3619705 TTCTGCTGGCGGTGCTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAG > 1:275572/1‑76 TCTGCTGGCGGTGCTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGT < 1:883452/76‑1 CTGCTGGCGGTGCTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTC > 1:455621/1‑76 CTGCTGGCGGTGCAGGCGGCNATCAGTGAGGTATTGNTGGCATGGGTACTCTTGCGTCTGCTGCGAATTATTAGTC < 2:1337844/76‑1 TGGCGGTGCTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCG < 1:578220/76‑1 CTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACC > 1:230115/1‑76 CTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTAATGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACC > 1:824770/1‑76 GGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGAT < 1:745516/76‑1 CAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAA > 2:619463/1‑76 CAATCAGTGTGATATTGCTGGCATGGGTACTGGGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAA < 1:950972/76‑1 AATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAAC < 2:1233198/76‑1 ATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACG > 1:415328/1‑76 AGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGT < 2:179207/76‑1 AGTGTGATATTGCTGGCATGGGTAATGTGGCGTCTGCTGCGAATTCTTAGTCGACGGCGTAACCCGGATAACGAGT > 1:62679/1‑76 GTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTA > 1:1066405/1‑76 TGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGNTGTTGTCTTAACCCGGATAACGAGTAA < 2:5872/76‑1 TGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATT < 1:604027/76‑1 GATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTG < 1:988747/76‑1 ATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGA < 1:302440/76‑1 GCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATG < 1:251153/76‑1 CTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGA < 2:1105590/76‑1 CTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGA < 1:911791/76‑1 TGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAA > 1:358928/1‑76 GGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAAT > 2:1287009/1‑76 CATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGTTAACGAGTANTTGAAGATGAATGT < 1:49/76‑1 CATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGT > 2:1049262/1‑76 GGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTT < 1:1111880/76‑1 GGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTT > 2:1051485/1‑76 GGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTG < 2:857837/76‑1 ACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGT > 1:683426/1‑76 CTGTGGCGTCTGCTGCGAATTATCAGTCGTCGTCTTAACCCGGAGAACGAGTAATTGANGATGAATGTGTTGCGTA < 1:169065/76‑1 TGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAG > 2:862832/1‑76 GTGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGT > 1:1052728/1‑76 TGGCGTCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTG > 2:65764/1‑76 TCTGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATC > 2:319999/1‑76 TGCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGT > 2:716426/1‑76 GCTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTG > 2:485213/1‑76 CTGCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGA > 2:1287034/1‑76 GCGAATTATTAGTCGTGGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTAGAATCGTGACG < 1:39454/76‑1 GCGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACG < 1:610932/76‑1 CGAATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGA > 2:946062/1‑76 AATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATG > 1:1214829/1‑76 AATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATG > 2:938129/1‑76 ATTATTAGTCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGC > 1:624139/1‑76 TCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTG > 2:474669/1‑76 TCGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTG < 1:591431/76‑1 CGTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTGG < 1:97473/76‑1 GTCGTCTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTGGC > 1:94823/1‑76 GTCTTAACCCGGATAACNCGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCCGTAGTTGGCTGC > 1:170198/1‑76 CTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTGGCTGCCT > 2:1200445/1‑76 TTCTGCTGGCGGTGCTGGCGGCAATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3619866‑3619783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgtcgtcTTAACCCGGATAACGAGTAATTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTGGCTGCCT < REL606/3619779‑3619705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |