| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,619,789 | (GAC)4→3 | coding (2309‑2311/2340 nt) | yhjN ← | regulator of cellulose synthase, cyclic di‑GMP binding |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3619780 | 3619782 | 3 | 46 [0] | [0] 45 | yhjN | regulator of cellulose synthase, cyclic di‑GMP binding |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3619783 = | 0 (0.000) | 39 (1.050) | 35/132 | 0.1 | 100% | coding (2317/2340 nt) | yhjN | regulator of cellulose synthase, cyclic di‑GMP binding |
| ? | REL606 | = 3619779 | 0 (0.000) | coding (2321/2340 nt) | yhjN | regulator of cellulose synthase, cyclic di‑GMP binding | |||||
AAGGCAGCCAACAACAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAGACGACGACGACTAATAATTCGCAGCAGACGCCACAGTACCCATGCCAGCAATATCACACTGATTGCCGC > REL606/3619704‑3619849 | aaGGCAGCCAACTACAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGCGTTaa > 2:56222/1‑76 (MQ=255) aGGCAGCCAACAACAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAg > 2:1200445‑M2/1‑75 (MQ=255) gCAGCCAACTACGGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACGNGTTATCCGGGTTAAgac > 1:170198‑M2/1‑73 (MQ=255) gCCAACAACAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgac > 1:94823‑M2/1‑70 (MQ=255) ccAACAACAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacg < 1:97473‑M2/76‑8 (MQ=255) caacaaCAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacga > 2:474669‑M2/1‑68 (MQ=255) caacaaCAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacga < 1:591431‑M2/76‑9 (MQ=255) gCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataat > 1:624139‑M2/1‑60 (MQ=255) cATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataatt > 1:1214829‑M2/1‑59 (MQ=255) cATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataatt > 2:938129‑M2/1‑59 (MQ=255) tCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcg > 2:946062‑M2/1‑57 (MQ=255) cGTCACGATTCTACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgaccacgactaataattcgc < 1:39454‑M2/76‑21 (MQ=255) cGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgc < 1:610932‑M2/76‑21 (MQ=255) tCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcag > 2:1287034‑M2/1‑54 (MQ=255) cACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagc > 2:485213‑M2/1‑53 (MQ=255) aCGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagca > 2:716426‑M2/1‑52 (MQ=255) gATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcaga > 2:319999‑M2/1‑50 (MQ=255) cACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgcca > 2:65764‑M2/1‑45 (MQ=255) aCTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccac > 1:1052728‑M2/1‑44 (MQ=255) cTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccaca > 2:862832‑M2/1‑43 (MQ=255) tACGCAACACATTCATCNTCAATTACTCGTTCTCCGGGTTAAgacgacgactgataattcgcagcagacgccacag < 1:169065‑M2/76‑35 (MQ=255) aCGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagt > 1:683426‑M2/1‑41 (MQ=255) cAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacc < 2:857837‑M2/76‑39 (MQ=255) aaCACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtaccc < 1:1111880‑M2/76‑40 (MQ=255) aaCACATTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtaccc > 2:1051485‑M2/1‑37 (MQ=255) acaTTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatg > 2:1049262‑M2/1‑34 (MQ=255) acaTTCATCTTCAANTACTCGTTAACCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatg < 1:49‑M2/76‑43 (MQ=255) aTTCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgcc > 2:1287009‑M2/1‑32 (MQ=255) ttCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgcca > 1:358928‑M2/1‑31 (MQ=255) tCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccag < 2:1105590‑M2/76‑47 (MQ=255) tCATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccag < 1:911791‑M2/76‑47 (MQ=255) cATCTTCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagc < 1:251153‑M2/76‑48 (MQ=255) tCAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatat < 1:302440‑M2/76‑53 (MQ=255) cAATTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatc < 1:988747‑M2/76‑54 (MQ=255) aaTTACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatca < 1:604027‑M2/76‑55 (MQ=255) ttACTCGTTATCCGGGTTAAgacaacanctaataattcgcagcagacgccacagtacccatgccagcaatatcaca < 2:5872‑M2/76‑57 (MQ=255) tACTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatcacac > 1:1066405‑M2/1‑19 (MQ=255) aCTCGTTATCCGGGTTACgccgtcgactaagaattcgcagcagacgccacattacccatgccagcaatatcacact > 1:62679‑M2/1‑18 (MQ=255) aCTCGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatcacact < 2:179207‑M2/76‑59 (MQ=255) cGTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatcacactgat > 1:415328‑M2/1‑15 (MQ=255) gTTATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatcacactgatt < 2:1233198‑M2/76‑63 (MQ=255) ttATCCGGGTTAAgacgacgactaataattcgcagcagacgccccagtacccatgccagcaatatcacactgattg < 1:950972‑M2/76‑64 (MQ=255) ttATCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatcacactgattg > 2:619463‑M2/1‑13 (MQ=255) aTCCGGGTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatcacactgattgcc < 1:745516‑M2/76‑66 (MQ=255) ggTTAAgacgacgactaataattcgcagcagacgccacattacccatgccagcaatatcacactgattgccgccag > 1:824770‑M2/1‑6 (MQ=255) ggTTAAgacgacgactaataattcgcagcagacgccacagtacccatgccagcaatatcacactgattgccgccag > 1:230115‑M2/1‑6 (MQ=255) | AAGGCAGCCAACAACAGCATCGTCACGATTCCACTACGCAACACATTCATCTTCAATTACTCGTTATCCGGGTTAAGACGACGACGACTAATAATTCGCAGCAGACGCCACAGTACCCATGCCAGCAATATCACACTGATTGCCGC > REL606/3619704‑3619849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |