| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 47 (1.150) | 36/144 | 0.2 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 32 (0.780) | 26/144 | 0.7 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772781‑2772923 | gAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAAcccc < 1:329763/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATaa < 2:364940/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCCCCGGGGCGGGGGACACCC‑CGAAC‑GGGGGGGGAAAAACCCACaa > 2:769250/1‑76 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCCCCGGGGCGGGGGAAACCC‑CGAACGGGGGGGGAAAAACCCCaaag > 1:155223/1‑73 (MQ=255) aTTCATCGTGATGACCGGTTTACCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCt < 1:918243/76‑1 (MQ=255) ttCAGCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTa < 2:718800/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTaa < 2:580414/76‑1 (MQ=255) cATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAc < 1:122143/76‑1 (MQ=255) aTCGTGATGACCGGTGTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACt < 1:1105720/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTa < 2:1144230/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGCGGGGGACACCC‑TGAAC‑GGGGGGGAAAAAACCCATAAGCGCTAAATTaa > 2:374010/1‑76 (MQ=37) atgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAggg < 2:998492/76‑1 (MQ=255) gaCCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:383512/76‑1 (MQ=255) aCCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAATTAAGGGTtg > 2:129824/1‑76 (MQ=255) cGGTCTAGCCCCGCTGTCGCGGGGAACACCA‑TGAAC‑GGTGGGGAAATACCACATAAGCGCTAACTTAAGGGTtgtg < 1:24465/76‑1 (MQ=25) gTTTATCCCCGCTGGCGCGGCGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTTAGGGTTGGGGt > 2:114793/1‑76 (MQ=38) tttAACCCACCTGGCGCGGGG‑ACACCCATGAGT‑GGTGTGGAACAACGCCATAAGCGCTAACTTTAGGGTTGTGGTa < 1:1298232/76‑1 (MQ=9) tATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGTAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1120146/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt > 2:913074/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGTACNCCN‑TGAAC‑GGCGGGGAAAAACCCCNTAAGCGCNANCTTAAGGGTTGTGGTATTa > 2:196815/1‑76 (MQ=25) aTCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:373703/76‑1 (MQ=255) aTCCCCGCGGGCGGGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:1015864/76‑1 (MQ=255) ccccGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 2:840724/76‑1 (MQ=255) ccGCTGGCGCGGGGAACACCC‑TGTAC‑GGTGGGGAAAAACACCAATAGCGCTAACTTTAGGGTTGTGGGATTACGcc > 2:1194830/1‑76 (MQ=37) cTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 1:579170/1‑76 (MQ=255) cTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 2:304955/1‑76 (MQ=255) ggCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata < 1:1194830/76‑1 (MQ=255) cgcgGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCTATNAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg > 1:1311391/1‑76 (MQ=255) cgcgGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATg < 1:1330459/76‑1 (MQ=255) gcgGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 1:818698/76‑1 (MQ=255) gcgGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 2:776267/76‑1 (MQ=255) cgGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 2:454661/1‑76 (MQ=255) ggggAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 1:1052533/1‑76 (MQ=255) ggAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa > 1:1271635/1‑76 (MQ=255) gAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:744092/76‑1 (MQ=255) acCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 1:581014/76‑1 (MQ=255) cc‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc > 2:711241/1‑76 (MQ=255) c‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg < 2:1271635/76‑1 (MQ=255) gAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:1044101/76‑1 (MQ=255) gAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 2:344666/76‑1 (MQ=255) aaaggTGGGGAAAAACCCCATAAGCGCTCACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATg > 2:740621/4‑76 (MQ=14) aC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 2:343899/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 2:766572/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 1:976906/1‑76 (MQ=40) gggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct < 2:525071/76‑1 (MQ=38) aaaaaCCCCGTAAGCGCACACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCNGANGAATTACtctc > 2:204312/1‑76 (MQ=11) | GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCC‑TGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772781‑2772923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |