| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 47 (1.150) | 36/144 | 0.2 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 32 (0.780) | 26/144 | 0.7 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
CATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACG > REL606/4524447‑4524597 | cATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGc > 2:1106379/1‑76 (MQ=255)cATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGc < 1:840370/76‑1 (MQ=255) ttAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGc > 1:321489/1‑76 (MQ=255) catcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCaa > 1:1261159‑M2/71‑76 (MQ=255) aGTTCAGAAACAACCCTTAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCaa < 1:835271/76‑1 (MQ=255) gTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAc > 1:1066556‑M2/1‑75 (MQ=255) atcgtcttaacgaggcaccgaggcgtcgcattcttcggatggttcaacccttaagttagcgcttatgggCCGCAAc < 2:1253017‑M2/7‑1 (MQ=255) atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgtttatcggCCGCAAc > 2:81512‑M2/70‑76 (MQ=255) atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAAc > 2:899950‑M2/70‑76 (MQ=255) cAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAccca > 1:708653‑M2/1‑72 (MQ=255) aGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccat > 2:725882‑M2/1‑71 (MQ=255) cttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCgg > 2:393043‑M2/65‑76 (MQ=255) aaaCAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataa < 1:999326‑M2/76‑8 (MQ=255) aaaCAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataa < 1:610288‑M2/76‑8 (MQ=255) aaaCAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataa < 1:311146‑M2/76‑8 (MQ=255) taacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGt < 2:691654‑M2/14‑1 (MQ=255) aacgaggcaccgagncgtcgcattcttcagatggttcaacccttaaggtagcgcttatgggCCGCACCTCNGGGtg < 2:1340299‑M2/15‑1 (MQ=255) aacCCTGTATTACGGAACGAATACCATGCCGTTTCAGGCNNGTTATTTNGCAACCGGGGCCGCAAcccataagcgc > 1:1318357‑M2/1‑65 (MQ=255) aggcaccgaggcgtcgcattcttcagatggttcaacacttaagttagcgcttatgggCCGCAACCCCGGGtgctgc > 2:1065080‑M2/58‑76 (MQ=255) ccTGAATAACGGNACNAATACCATTCCGTTCCAGNCGCGTTTTTTTGCAACCGGGGCCGCAAcccataagcgctaa > 1:1090262‑M2/1‑62 (MQ=255) gcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTa < 2:471468‑M2/21‑1 (MQ=255) gcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTa < 2:865408‑M2/21‑1 (MQ=255) gAATAACGGAACCAATANCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGCCCGCAAcccacaaacgctaactt < 1:168268‑M2/76‑18 (MQ=255) gAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactt < 1:845268‑M2/76‑18 (MQ=255) accgaggcgtcgcattcttcagttggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAAt > 2:471946‑M2/54‑76 (MQ=255) gaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCg > 2:422858‑M2/51‑76 (MQ=255) ggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGa < 2:1185714‑M2/28‑1 (MQ=255) gcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGAt < 1:1278554‑M2/29‑1 (MQ=255) gcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGAt < 2:450479‑M2/29‑1 (MQ=255) gcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGAt < 2:813726‑M2/29‑1 (MQ=255) cGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggt > 1:992612‑M2/1‑53 (MQ=255) ggAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggtt > 2:557076‑M2/1‑52 (MQ=255) cgtcgcattcttcaggtggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATg < 1:1109026‑M2/30‑1 (MQ=255) gAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttg > 2:848926‑M2/1‑51 (MQ=255) gAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttg < 2:827528‑M2/76‑26 (MQ=255) aaCCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgt < 1:1004857‑M2/76‑27 (MQ=255) cattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGNATGCGAcc < 1:1289746‑M2/35‑1 (MQ=255) aaTACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaagttaagggttgtggta < 1:1110625‑M2/76‑31 (MQ=255) aaTACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggta < 1:899929‑M2/76‑31 (MQ=255) ttcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCtt < 1:157806‑M2/37‑1 (MQ=255) tACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCCAcccataagcgctaacttaagggttgaggtatt < 1:544154‑M2/76‑33 (MQ=255) tACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtatt < 1:962716‑M2/76‑33 (MQ=255) cttcagatggttcaacccttaagttagcgcttttgggCCGCAACCCCGGGTGCTGCTAATGCGGGTGCGACCTTCa < 1:79372‑M2/39‑1 (MQ=255) ccATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattac > 1:397240‑M2/1‑42 (MQ=255) ccATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattac > 1:734973‑M2/1‑42 (MQ=255) tcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAg < 1:562237‑M2/41‑1 (MQ=255) cATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacg > 1:250913‑M2/1‑41 (MQ=255) cATACCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacg > 2:1037359‑M2/1‑41 (MQ=255) cagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAgg < 1:1275587‑M2/42‑1 (MQ=255) ttCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcc > 1:659267‑M2/1‑39 (MQ=255) tgatggttcaaccattaagttagcgcttatgggCCGCATCCCCGGGTGCTGCTAATGCGGGCGCTACCTTCACGGt > 2:17078‑M2/34‑76 (MQ=255) ccGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctg > 1:555847‑M2/1‑37 (MQ=255) gTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtactacgcctgat < 1:1063205‑M2/76‑42 (MQ=255) ttCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgata > 2:877880‑M2/1‑34 (MQ=255) ccAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatg > 2:976692‑M2/1‑32 (MQ=255) ccAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccaaaaacgctaactnaagggttgtggtattacgcctgatatg > 1:1169743‑M2/1‑32 (MQ=255) caacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATc < 2:1197086‑M2/51‑1 (MQ=255) caacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATc < 1:727125‑M2/51‑1 (MQ=255) cAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatga < 1:698938‑M2/76‑46 (MQ=255) aGGCGCGTTATTTTGAAACCGGGGCCGCAAcccctaagcgctaacttaagggttgtggtatnacgcctgatatgat < 1:1144186‑M2/76‑47 (MQ=255) cccttaagctagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGTGGATGCGACTTTCATGGTTCAGTATCAAt > 2:20974‑M2/23‑76 (MQ=255) cgcgTTATTTTGCAACCGGCGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgattta < 1:1136334‑M2/76‑50 (MQ=255) ccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATa < 2:696308‑M2/55‑1 (MQ=255) gcgTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaa > 2:753230‑M2/1‑26 (MQ=255) cgTTATTTTGNAGGCGGGGCCNCAAcccataagctctaacttaagggttgtggtattacgcctgatatgatttaac < 2:1324086‑M2/76‑52 (MQ=255) ttATTTTGCAACGGGGGCCGCAAgccataagcgctaacttaagggttgtggtattacgnctgatatcatttaacgt > 1:166423‑M2/1‑23 (MQ=255) aagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCt < 2:932776‑M2/59‑1 (MQ=255) agttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTa > 1:417687‑M2/17‑76 (MQ=255) agttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTa < 2:679142‑M2/60‑1 (MQ=255) tttGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccg > 1:642846‑M2/1‑19 (MQ=255) gCGACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatg > 2:876490‑M2/1‑16 (MQ=255) gCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatg > 2:1269068‑M2/1‑16 (MQ=255) cttatgagCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGtt > 2:741443‑M2/9‑76 (MQ=255) aCCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaat > 2:475787‑M2/1‑13 (MQ=255) tatgggCCGCCACCCCGAGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATATCCTACCCAGGTTCa > 1:112438‑M2/7‑76 (MQ=255) ccGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgcngatgaatt > 1:1283467‑M2/1‑12 (MQ=255) ggggCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattac < 1:726534‑M2/76‑67 (MQ=255) ggCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactc > 2:924440‑M2/1‑8 (MQ=255) ccGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctc < 1:657191‑M2/76‑71 (MQ=255) ccGCAAcccataagcgctaacttaagggttgtggaatnacgcctgatatgatttaacgtgccgatgaattactctc < 1:1303164‑M2/76‑71 (MQ=255) | CATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACG > REL606/4524447‑4524597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |