| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,912,872 | Δ5 bp | coding (513‑517/1647 nt) | ilvG → | acetolactate synthase II, valine insensitive, large subunit |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3912872 | 3912876 | 5 | 30 [0] | [0] 32 | ilvG | acetolactate synthase II, valine insensitive, large subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3912871 | 0 (0.000) | 30 (0.790) | 24/150 | 0.7 | 100% | coding (512/1647 nt) | ilvG | acetolactate synthase II, valine insensitive, large subunit |
| ? | REL606 | 3912877 = | 0 (0.000) | coding (518/1647 nt) | ilvG | acetolactate synthase II, valine insensitive, large subunit | |||||
CGTCCTGGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3912804‑3912871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCAAA > REL606/3912877‑3912951 CGTCCTGGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTT > 2:95506/1‑76 CTGGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAA < 1:1157716/76‑1 CTGGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAA < 2:17755/76‑1 GGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAAC > 2:18624/1‑76 CCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAA < 2:857026/76‑1 GTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTn < 1:212184/76‑2 CTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACT > 2:149528/1‑76 CGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCC < 2:942673/76‑1 ATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCCCCGTTGAAAACGAAGTGACTTTCCCAC > 1:94298/1‑76 TATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACA < 1:433943/76‑1 ATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACAT < 1:966213/76‑1 CAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCG < 1:239580/76‑1 AAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAG > 2:203844/1‑76 nGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGT > 1:868981/2‑76 acATAGCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGT < 2:118513/74‑1 ATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTG < 2:1143027/76‑1 TCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGC > 2:254409/1‑76 TCCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGAATTTCCCACATGCCGAAGTTGAGC < 1:1158189/76‑1 CCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCA < 1:825556/76‑1 CCAGTTAGCCAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCA < 2:773076/76‑1 CAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCA > 2:1159524/1‑76 CAGCGGTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCA > 1:1030443/1‑76 GTGACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGC > 1:809547/1‑76 GACCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTG < 2:629983/76‑1 CCTGGAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGC < 2:919646/76‑1 GAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAA < 1:707766/76‑1 GAACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAA < 1:245113/76‑1 ACCGTGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGC > 1:531947/1‑76 TGCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCAA > 2:454413/1‑76 GCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCAAA < 2:559436/76‑1 CGTCCTGGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3912804‑3912871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCAAA > REL606/3912877‑3912951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |