| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,912,872 | Δ5 bp | coding (513‑517/1647 nt) | ilvG → | acetolactate synthase II, valine insensitive, large subunit |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3912872 | 3912876 | 5 | 30 [0] | [0] 32 | ilvG | acetolactate synthase II, valine insensitive, large subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3912871 | 0 (0.000) | 30 (0.790) | 24/150 | 0.7 | 100% | coding (512/1647 nt) | ilvG | acetolactate synthase II, valine insensitive, large subunit |
| ? | REL606 | 3912877 = | 0 (0.000) | coding (518/1647 nt) | ilvG | acetolactate synthase II, valine insensitive, large subunit | |||||
TGGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGGTTCACCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCAAAA > REL606/3912809‑3912952 | cgtcctggtccggttctggtcgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGtt > 2:95506‑M2/69‑76 (MQ=255) ctggtccggttctggtcgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGaaa < 1:1157716‑M2/12‑1 (MQ=255) ctggtccggttctggtcgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGaaa < 2:17755‑M2/12‑1 (MQ=255) ggtccggttctggtcgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAAc > 2:18624‑M2/63‑76 (MQ=255) ccggttctggtcgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGaa < 2:857026‑M2/17‑1 (MQ=255) gttctggtcgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAgtn < 1:212184‑M2/20‑2 (MQ=255) ctggtcgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACt > 2:149528‑M2/54‑76 (MQ=255) cgatatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTccc < 2:942673‑M2/28‑1 (MQ=255) atatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCCCCGTTGAAAACGAAGTGACTTTCCcac > 1:94298‑M2/47‑76 (MQ=255) tatcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCcaca < 1:433943‑M2/31‑1 (MQ=255) atcccaaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACAt < 1:966213‑M2/32‑1 (MQ=255) caaaagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCg < 1:239580‑M2/36‑1 (MQ=255) aagatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAg > 2:203844‑M2/38‑76 (MQ=255) ngatatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGt > 1:868981‑M2/37‑76 (MQ=255) acatagccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGt < 2:118513‑M2/40‑1 (MQ=255) atatccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTg < 2:1143027‑M2/42‑1 (MQ=255) tccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGc > 2:254409‑M2/32‑76 (MQ=255) tccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGAATTTCCCACATGCCGAAGTTGAGc < 1:1158189‑M2/45‑1 (MQ=255) ccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCa < 1:825556‑M2/46‑1 (MQ=255) ccagttagccagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCa < 2:773076‑M2/46‑1 (MQ=255) cagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCa > 2:1159524‑M2/22‑76 (MQ=255) cagcggtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCa > 1:1030443‑M2/22‑76 (MQ=255) gtgacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGc > 1:809547‑M2/17‑76 (MQ=255) gacctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTg < 2:629983‑M2/62‑1 (MQ=255) cctggaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGc < 2:919646‑M2/64‑1 (MQ=255) gaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCaaaa < 1:707766‑M2/68‑1 (MQ=255) gaaccgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCaaaa < 1:245113‑M2/68‑1 (MQ=255) accgtgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAgc > 1:531947‑M2/7‑76 (MQ=255) tgCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCaa > 2:454413‑M2/3‑76 (MQ=255) gCCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCaaa < 2:559436‑M2/75‑1 (MQ=255) ccaccGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCaaaa > 2:737109/1‑76 (MQ=255) ccaccGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCaaaa > 1:397708/1‑76 (MQ=255) | TGGTCCGGTTCTGGTCGATATCCCAAAAGATATCCAGTTAGCCAGCGGTGACCTGGAACCGTGGTTCACCACCGTTGAAAACGAAGTGACTTTCCCACATGCCGAAGTTGAGCAAGCGCGCCAGATGCTGGCAAAAGCGCAAAA > REL606/3912809‑3912952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |