| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 43 (1.100) | 35/144 | 0.1 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 34 (0.870) | 29/144 | 0.4 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAC > REL606/2772782‑2772919 | aaaTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCa < 1:688302/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg > 1:878480/1‑76 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAgcg > 1:995746/1‑76 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 1:755780/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTaa < 1:1125295/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGGGGGGGAAAACCCCATAAGCGCTaa > 1:361363/1‑76 (MQ=255) cagcGTGATGCCGGGTTTACCCCCGCGGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAAc < 1:594379/73‑1 (MQ=37) aTCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGGACACCCTGAACGGTGGGGAAAAACCCCCTAAGCGCTAACt > 2:733013/1‑76 (MQ=255) aTCGNGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACANCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACt < 1:149986/76‑1 (MQ=255) tCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 2:450120/76‑1 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAANCCCCATAAGCGCTAACTTa < 1:1219375/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGGGGGGGAAAACCCAATAAGCGCTAACTTaa > 2:322684/1‑76 (MQ=37) gatgaCCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAAACCCATAAGCGCTAACTTTAgg > 2:460830/1‑76 (MQ=255) tgaCCGGTTTATCCCCCCCGGCGCGGGGGGAAAACCCAAACGGGGGGGGAAAACCCCCAACAGCGC‑ACCTTAAggg > 2:364295/1‑76 (MQ=255) gggcGGTTTTCCCCCGGGGGGGG‑‑GGGGGACCCCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGtt < 1:433555/73‑1 (MQ=18) ccGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGCTtgt < 2:1280290/76‑1 (MQ=255) gTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:1200000/76‑1 (MQ=255) tttATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACNGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 2:1106384/1‑76 (MQ=255) ttATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGACAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 2:836482/1‑76 (MQ=255) ttATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 2:996411/76‑1 (MQ=255) ttACCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:429561/76‑1 (MQ=255) tATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTAtt > 2:455716/1‑76 (MQ=255) aTCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 2:652278/1‑76 (MQ=255) gcgggCGC‑‑GGGGANCACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 1:174394/73‑1 (MQ=255) gCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 1:826075/76‑1 (MQ=255) gCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 2:743670/76‑1 (MQ=255) cTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa < 1:685658/76‑1 (MQ=255) tGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat < 1:742478/76‑1 (MQ=255) tGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTCAAGGGTTGTGNTATTACGCCTTat > 1:167803/1‑76 (MQ=255) ggCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata < 1:428847/76‑1 (MQ=255) c‑‑gGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:1017779/1‑76 (MQ=255) c‑‑gGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 2:758115/76‑1 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 1:1106215/1‑76 (MQ=255) gggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt > 1:181112/1‑76 (MQ=255) gAACACCCTGAACGGTGGGGAAAGACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:1115124/76‑1 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:400817/76‑1 (MQ=255) aaCACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc < 1:95965/76‑1 (MQ=255) gAACGGTGGGGAAANACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGan < 2:178195/76‑2 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 2:361363/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTNAGGGTTGTGATATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:111460/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:961281/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:1100952/76‑1 (MQ=40) ggggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc > 1:1069710/1‑76 (MQ=39) | AAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGC‑‑GGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAC > REL606/2772782‑2772919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |