| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 43 (1.000) | 34/144 | 0.3 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 38 (0.880) | 31/144 | 0.4 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772781‑2772923 | gAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAAcccc < 1:871613/76‑1 (MQ=255) aaTTTTGACTCATCGTGATGACCGGTTTATCCCCGCTGGGGCGGGGAACACCCTGAAC‑GGTGGGGATAAACCCCAt > 1:42063/1‑76 (MQ=38) aTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAATACCCCATa < 1:44064/76‑1 (MQ=255) aTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATa < 2:1140772/76‑1 (MQ=255) aTTTTGATTCATCGTGATGACCGGTTTATCCCCGCCGGCGCGGGGGAAACCCCGAACGGGGGGGGAAAAAccccta > 1:1073321/1‑74 (MQ=25) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAg < 2:59761/76‑1 (MQ=255) tGATTCATCGTGATGACCGGTTTATCCCCGCTGNCGCGGGGAACACCCTGAAC‑GGGNGGGGAAAAGCNCATAAgcg > 2:1198468/1‑76 (MQ=37) ttCATCGTGATGACCGGTTTTTNNCCGCTGGCGCNNCGAACACCGTGAAC‑AGTGGGGAAAAACCCCATAAGCGCTa < 1:1276020/76‑1 (MQ=255) cATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAAc > 2:154443/1‑76 (MQ=255) aTCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACt < 1:515510/76‑1 (MQ=255) tCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:889149/76‑1 (MQ=255) cGTGATGACCGGTTTATCNCCGCTGGCGCGGGGAACACCTTGAAC‑GCTGGGGAAAAACCCCATAAGCGCTAACTTa > 1:1366874/1‑76 (MQ=38) cGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTa > 1:1397180/1‑76 (MQ=255) cGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:444109/76‑1 (MQ=255) cGTGATGACCGGTTTAGCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTa < 1:444104/76‑1 (MQ=255) tgatgaCCGGTTTATCCCCCCTGGCGCGGGGGACACCCTGAACGGGGGGGGAAAAACCCCA‑AAACGCGAACTTAAg > 2:493983/1‑76 (MQ=21) tgatgaCCGGTGTAGCCCCGCTGGCGCTGGGTACACCGTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAg < 1:1291290/76‑1 (MQ=37) atgaCCGGNTTATCCCCGCTGGCGCGGGGAACACCCTGAGC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAggg < 1:1250607/76‑1 (MQ=255) cGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTtgtg < 2:920973/76‑1 (MQ=255) gTTTACCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:1033027/76‑1 (MQ=255) tttATCCCCGCTGNCGCGGGGAACACCCTGCAC‑GGTGGGGAAAAATCCCATAAGCGCTAACTTAAGGGTTGTGGTa < 2:1297591/76‑1 (MQ=37) ttATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGCAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 1:234944/1‑76 (MQ=255) tacccccGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1035291/73‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAATCGTTAACTTAAGGGTTGTGGTAtt > 1:1345362/1‑76 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTATTAc > 2:627437/1‑76 (MQ=255) cccccGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc < 1:804798/75‑1 (MQ=255) ccccGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGNTGTGGTATTACg < 1:21795/76‑1 (MQ=255) gCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTg < 2:510118/76‑1 (MQ=255) ggCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata < 2:639333/76‑1 (MQ=255) gcgcGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAGGCGCTAACTTAAGGGTTGTGGTATTACGCCTGatat < 1:955026/76‑1 (MQ=255) cgcgGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:777954/76‑1 (MQ=255) gcgGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 2:1234339/76‑1 (MQ=255) gggAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:1266619/76‑1 (MQ=255) gggAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:1266638/76‑1 (MQ=255) gAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGGCTGATATGATTTaa < 2:798920/76‑1 (MQ=255) gAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:824895/76‑1 (MQ=255) gAACACCCNGAAC‑GGTGGGGAAAAACCCCATAAGCGCTATCTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:1247498/76‑1 (MQ=255) ccTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc > 1:739906/1‑76 (MQ=255) ccTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc > 1:925142/1‑76 (MQ=255) cTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:780531/1‑76 (MQ=255) cTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg < 1:63639/76‑1 (MQ=255) tGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa > 2:629826/1‑76 (MQ=255) c‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 1:790581/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 2:460824/76‑1 (MQ=255) tGGGGAAAACCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:1226668/1‑76 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:149818/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 1:1120581/1‑76 (MQ=40) ggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 2:1049445/1‑76 (MQ=35) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAANGTGCCGATGAATTACtctc < 1:1326982/76‑1 (MQ=17) aaaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc > 1:376921/1‑76 (MQ=32) | GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAAC‑GGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772781‑2772923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |