| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 475,285 | Δ2,907 bp | [ybaL]–[ushA] | [ybaL], fsr, [ushA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 475285 | 478191 | 2907 | 31 [0] | [0] 32 | [ybaL]–[ushA] | [ybaL],fsr,[ushA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 475284 | 0 (0.000) | 27 (0.800) | 23/138 | 0.5 | 100% | coding (22/1677 nt) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| ? | REL606 | 478192 = | 0 (0.000) | coding (1212/1653 nt) | ushA | UDP‑sugar hydrolase | |||||
GAGAAATACGTAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAAT > REL606/475212‑475359 | gagaAATACGTAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgag < 1:635967‑M1/76‑4 (MQ=255) agaAATACGTAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagc > 2:1079074‑M1/1‑72 (MQ=255) aaaTACGTAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcgg < 2:464999‑M1/76‑7 (MQ=255) gTAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcgg < 2:729253‑M1/76‑13 (MQ=255) gTAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcgg < 2:194118‑M1/76‑13 (MQ=255) tAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcgga > 2:940058‑M1/1‑63 (MQ=255) ttATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattc < 1:191341‑M1/76‑18 (MQ=255) ttATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattc > 2:894125‑M1/1‑59 (MQ=255) ttGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtg > 2:769197‑M1/1‑56 (MQ=255) tGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtga > 1:51829‑M1/1‑55 (MQ=255) tGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtga > 1:426190‑M1/1‑55 (MQ=255) tGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTAATgagcggatgcggaattcgtga > 1:996388‑M1/1‑55 (MQ=255) ggCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgat < 1:841773‑M1/76‑23 (MQ=255) aTGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcg < 1:482486‑M1/76‑30 (MQ=255) tGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcga < 2:91609‑M1/76‑31 (MQ=255) ccGAGGATAAAGGCGAGCACAAGGCCTCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaag < 2:866777‑M1/76‑33 (MQ=255) ccGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaag > 1:690184‑M1/1‑44 (MQ=255) ccGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaag < 2:392442‑M1/76‑33 (MQ=255) aaGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaagcaggcgata > 2:120093‑M1/1‑35 (MQ=255) aaGGCGAGCACAAGGCCACCAACAATGGTGGTGATgagcggaggcggaattcgtgantctatcgaagcaggcgata < 1:1089072‑M1/76‑42 (MQ=255) aGGCGAGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaagcaggcgatat < 1:646048‑M1/76‑43 (MQ=255) aGCACAAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagct < 2:285424‑M1/76‑48 (MQ=255) canaAGTCCGCGAACAATGGTGGTGGTgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagctat < 2:1102835‑M1/76‑50 (MQ=255) acaAGGCCGCCAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagctata < 1:247479‑M1/76‑51 (MQ=255) ccgccAACAATGGTGGTGATgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagctataaaaacg < 2:896895‑M1/76‑57 (MQ=255) aacaaTGGTGGTGATgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagctataaaaacgtgctg < 2:786409‑M1/76‑62 (MQ=255) acaaTGGTGGTGATgagcggaggcggaactcgtgatcatatcgaagcnggagatatcagctataaaaacgtgctga > 1:96860‑M1/1‑14 (MQ=255) ggtgATgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagctataaaaacgtgctgaaagtgcag < 2:588379‑M1/76‑71 (MQ=255) ggtgATgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagctataaaaacgtgctgaaagtgcag < 1:376645‑M1/76‑71 (MQ=255) tgagcggangcggagttcgngattctatcgaagcaggcgatancagctataaaaacgtgctgaaagtgcagccatt < 2:971857‑M1/76‑76 (MQ=255) tgagcggaggcggaattcgtgattctatcgaagcaggcgatatcagctataaaaacgtgctgaaagtgcagccatt < 1:529705‑M1/76‑76 (MQ=255) | GAGAAATACGTAGTTTATTGGCCAGCATGCCGAGGATAAAGGCGAGCACAAGGCCGCCAACAATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAAT > REL606/475212‑475359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |