| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 787,879 | Δ12,090 bp | ECB_00726–ECB_00739 | ECB_00726, ECB_00727, ECB_00728, ECB_00729, ECB_00730, ECB_00731, ECB_00732, ECB_00733, ECB_00734, ECB_00735, ECB_00736, ECB_00737, ECB_00738, ECB_00739 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 787879 | 799968 | 12090 | 46 [0] | [0] 45 | ECB_00726–ECB_00739 | ECB_00726,ECB_00727,ECB_00728,ECB_00729,ECB_00730,ECB_00731,ECB_00732,ECB_00733,ECB_00734,ECB_00735,ECB_00736,ECB_00737,ECB_00738,ECB_00739 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 787878 | 0 (0.000) | 38 (1.050) | 30/120 | 0.2 | 100% | intergenic (‑61/+74) | ybhC/ECB_00726 | predicted pectinesterase/integrase |
| ? | REL606 | 799969 = | 0 (0.000) | intergenic (‑694/+90) | ECB_00739/ybhB | hypothetical protein/predicted kinase inhibitor | |||||
GAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATT > REL606/787804‑787953 | gAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAt > 2:837897‑M1/1‑75 (MQ=255)gAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAt > 2:314283‑M1/1‑75 (MQ=255) aaaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtt > 2:75967‑M1/1‑74 (MQ=255) aaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAttt > 2:965167‑M1/1‑73 (MQ=255) aaaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAttt < 1:1024313‑M1/76‑4 (MQ=255) aaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttg < 2:371475‑M1/76‑5 (MQ=255) aaTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttg < 1:485438‑M1/76‑5 (MQ=255) aTGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttga > 1:427868‑M1/1‑71 (MQ=255) gtTCACAGGTTGCTCCGGGCTATGAAATAGAAANATGAATCCGATGAAGCCTGCTTNTTTATACTTAnttgagcga > 2:1201185‑M1/1‑67 (MQ=255) tCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaa < 1:738574‑M1/76‑12 (MQ=255) cacaGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaac < 1:1073077‑M1/76‑13 (MQ=255) cacaGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaac > 2:841750‑M1/1‑64 (MQ=255) cacaGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaac > 1:682756‑M1/1‑64 (MQ=255) caGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgg > 2:1328595‑M1/1‑62 (MQ=255) caGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgg > 2:878359‑M1/1‑62 (MQ=255) gCTCCGGGNTGTGATATAGNAAAATGAATCCGTTGAAGCCTGNTTTTTTATACTAAtttgagcgaaacgggaaggt < 2:1210000‑M1/76‑21 (MQ=255) gCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATGCTAAtttgagngaaacgggaatga > 1:193096‑M1/1‑56 (MQ=255) gCTCCGGGCNATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggt > 1:37078‑M1/1‑56 (MQ=255) cTCCGCGCTATGAAATAGAAAAAGGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggta < 2:1393781‑M1/76‑22 (MQ=255) tCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaa < 2:847160‑M1/76‑23 (MQ=255) cTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagac < 2:872822‑M1/76‑29 (MQ=255) tATGAAATAGAAAAATGAATCCGTTGANGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagaca > 1:1444149‑M1/1‑47 (MQ=255) aaaTAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaa > 2:1100156‑M1/1‑43 (MQ=255) tAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagtt < 1:259910‑M1/76‑37 (MQ=255) aGAAAAATGAATCCGTTGAAGCCTGCTTTTATATACTAAtttgagcgaaacgggaaggtaaanagacaaaaagttg > 2:1324396‑M1/1‑39 (MQ=255) aTCCGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatac > 2:490305‑M1/1‑29 (MQ=255) aTCCGTTGAAGCCTACTTTTTAATACTAAtttgagcgaaacgggaaggtaaaaagacacaaagttgtttttaatac < 2:219478‑M1/76‑48 (MQ=255) ccGTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacct > 1:209094‑M1/1‑27 (MQ=255) gTTGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaataccttt > 2:353268‑M1/1‑25 (MQ=255) tGAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaa < 1:493899‑M1/76‑54 (MQ=255) gAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaag < 2:682756‑M1/76‑55 (MQ=255) gAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaag < 1:1100156‑M1/76‑55 (MQ=255) gAAGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagntgtttttaatacctttaag < 1:1341035‑M1/76‑55 (MQ=255) aaGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagt > 2:542035‑M1/1‑21 (MQ=255) aaGCCTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagt < 2:255445‑M1/76‑56 (MQ=255) cTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgata < 2:682991‑M1/76‑60 (MQ=255) cTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgata > 2:1006313‑M1/1‑17 (MQ=255) cTGCTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgata > 1:1087802‑M1/1‑17 (MQ=255) gCTTTTTTATACTAAtttgagcgaaacgggtaggtaaaaagacaacaagttgtttttaatacntttaagtgatacc > 2:1314214‑M1/1‑15 (MQ=255) cTTTTTTATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgatacca > 2:734161‑M1/1‑14 (MQ=255) ttATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgataccagatgg > 1:778429‑M1/1‑9 (MQ=255) ttATACTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgataccagatgg > 1:59997‑M1/1‑9 (MQ=255) tataCTAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgataccagatggc < 1:618931‑M1/76‑69 (MQ=255) tAAtttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgataccagatggcattgc > 1:1189255‑M1/1‑3 (MQ=255) aatttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgataccagatggcattgcg > 1:273252‑M1/1‑2 (MQ=255) atttgagcgaaacgggaaggtaaaaagacaaaaagttgtttttaatacctttaagtgataccagatggcattgcgc > 1:201813‑M1/1‑1 (MQ=255) | GAAAATGTGTTCACAGGTTGCTCCGGGCTATGAAATAGAAAAATGAATCCGTTGAAGCCTGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATT > REL606/787804‑787953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |