| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,147,777 | Δ19 bp | [ygjF] | [ygjF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3147777 | 3147795 | 19 | 31 [0] | [0] 31 | [ygjF] | [ygjF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3147776 | 0 (0.000) | 31 (1.060) | 25/148 | 0.2 | 100% | intergenic (+71/+8) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 | 3147796 = | 0 (0.000) | coding (495/507 nt) | ygjF | G/U mismatch‑specific DNA glycosylase | |||||
TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147702‑3147776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCGCT > REL606/3147796‑3147867 TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGC < 2:428965/76‑1TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGC < 2:293672/76‑1TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGC < 2:19789/76‑1 CGGTAGGCCGGATCAGGCGTTCCGCCGTACCNCGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTAC > 1:78892/1‑76 CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAGACGCCACCTTTTCGGTGCACTAC < 1:743831/76‑1 TAGGCCGGATCAGGCGTTACTCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAG < 2:808417/76‑1 TAGGCCGGATCAGGCGTTACGCCGCACCTGGCACTAGGCCCTCTGCACAAACGCCACATTTTCGGTGCACTACCAG < 2:873834/76‑1 TAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAG < 2:8915/76‑1 TAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAG < 1:616709/76‑1 AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGC < 2:537879/76‑1 AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGC > 1:309348/1‑76 CCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCC < 1:564593/76‑1 CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCT < 1:379605/76‑1 GATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGG > 2:914261/1‑76 AGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCA < 1:199449/76‑1 CGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCT < 1:422985/76‑1 TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTCACAGCGCCTGGTCCAGCTCGC > 2:806475/1‑76 ccCTAGGCCCGCTGCACACACGCCAGCTTTGCGGTGCACGACCAGCGCCTCGTCCAGCTCGCGATACGCTTCAACC > 2:880225/3‑76 ACTAGGCCCTCTGCACAAACGCCACCTTTTCGGAGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCA > 2:261112/1‑76 CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAG > 1:727156/1‑76 AGGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTT > 1:364595/1‑76 GGCCCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTAACGATACGCTTCAACCAGTTT > 2:809794/1‑76 CCTCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTC > 2:473823/1‑76 TCTGCACAAACGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCA < 1:438069/76‑1 TGCACAAACGCCACCTTTTCGATGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGT < 2:22014/76‑1 CGCCACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCG < 1:269005/76‑1 CACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACT > 1:690608/1‑76 ACCTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTT < 1:590425/76‑1 CTTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACAAGTTTCTCCAGTGAAACGCGACTTAA < 1:850190/76‑1 TTTTCGGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAA < 2:898862/76‑1 GGTGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCGCT > 1:263355/1‑76 TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147702‑3147776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCGCT > REL606/3147796‑3147867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |