| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,147,777 | Δ19 bp | [ygjF] | [ygjF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3147777 | 3147795 | 19 | 31 [0] | [0] 31 | [ygjF] | [ygjF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3147776 | 0 (0.000) | 31 (1.060) | 25/148 | 0.2 | 100% | intergenic (+71/+8) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 | 3147796 = | 0 (0.000) | coding (495/507 nt) | ygjF | G/U mismatch‑specific DNA glycosylase | |||||
TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > REL606/3147702‑3147848 | ttAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGc < 2:428965‑M1/76‑2 (MQ=255)ttAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGc < 2:293672‑M1/76‑2 (MQ=255)ttAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGc < 2:19789‑M1/76‑2 (MQ=255) cGGTAGGCCGGATCAGGCGTTCCGCCGTACCNCGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactac > 1:78892‑M1/1‑70 (MQ=255) cGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAGACGCCACCTTTTCGGTGcactac < 1:743831‑M1/76‑7 (MQ=255) tAGGCCGGATCAGGCGTTACTCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccag < 2:808417‑M1/76‑10 (MQ=255) tAGGCCGGATCAGGCGTTACGCCGCACCTGGCACTAGGCCCTCTGCACAAACGCCACATTTTCGGTGcactaccag < 2:873834‑M1/76‑10 (MQ=255) tAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccag < 2:8915‑M1/76‑10 (MQ=255) tAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccag < 1:616709‑M1/76‑10 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagc < 2:537879‑M1/76‑11 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagc > 1:309348‑M1/1‑66 (MQ=255) ccGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcc < 1:564593‑M1/76‑14 (MQ=255) cGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcct < 1:379605‑M1/76‑15 (MQ=255) gATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcctgg > 2:914261‑M1/1‑60 (MQ=255) aGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcctggtcca < 1:199449‑M1/76‑21 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcctggtccagct < 1:422985‑M1/76‑24 (MQ=255) tACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactcacagcgcctggtccagctcgc > 2:806475‑M1/1‑50 (MQ=255) ccctaGGCCCGCTGCACACACGCCAGCTTTGCGGTGcacgaccagcgcctcgtccagctcgcgatacgcttcaacc > 2:880225‑M1/3‑36 (MQ=255) aCTAGGCCCTCTGCACAAACGCCACCTTTTCGGAGcactaccagcgcctggtccagctcgcgatacgcttcaacca > 2:261112‑M1/1‑35 (MQ=255) cTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccag > 1:727156‑M1/1‑34 (MQ=255) aGGCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtt > 1:364595‑M1/1‑32 (MQ=255) ggCCCTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcctggtccagctaacgatacgcttcaaccagttt > 2:809794‑M1/1‑31 (MQ=255) ccTCTGCACAAACGCCACCTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctc > 2:473823‑M1/1‑28 (MQ=255) tctGCACAAACGCCACCTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctcca < 1:438069‑M1/76‑51 (MQ=255) tGCACAAACGCCACCTTTTCGATGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagt < 2:22014‑M1/76‑53 (MQ=255) cGCCACCTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcg < 1:269005‑M1/76‑61 (MQ=255) cACCTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgact > 1:690608‑M1/1‑13 (MQ=255) aCCTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgactt < 1:590425‑M1/76‑65 (MQ=255) cTTTTCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaacaagtttctccagtgaaacgcgacttaa < 1:850190‑M1/76‑67 (MQ=255) ttttCGGTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgacttaaa < 2:898862‑M1/76‑68 (MQ=255) ggTGcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgacttaaaccgct > 1:263355‑M1/1‑4 (MQ=255) | TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > REL606/3147702‑3147848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |