| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 41 (1.130) | 31/144 | 0.2 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 39 (1.070) | 32/144 | 0.2 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772781‑2772923 | gAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAAcccc < 2:926575/76‑1 (MQ=255) atttttAATTCATCGTAAGGCCCGTTTTCCCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCAt < 1:614330/74‑1 (MQ=25) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAg < 1:725897/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCt < 1:934593/76‑1 (MQ=255) aTTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCt < 1:556813/76‑1 (MQ=255) tCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGAGGGGAAAAAACCCCAT‑AGCGCTaa > 2:1077719/1‑76 (MQ=25) aTCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGGACACCCCGAACGGGGGGG‑GAAAACCCCATAAGCGCTAAC‑t > 2:679777/1‑76 (MQ=37) tCGTGATGACCGGTTTAGCCCCGCTGGCGCGGGGAACACCCTNAACGGTGGGG‑AAAAGCCCCGTAAGCGCTAAC‑tt < 2:1032056/76‑1 (MQ=37) cGTGATGACCGGTTTACCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTa < 1:528128/76‑1 (MQ=255) gTGATGCCCGGTTTACCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTaa < 1:597158/76‑1 (MQ=255) tgatggCCNGTTTATCCCCGCTGGCGCGGGGAACACCCTCAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAg < 1:1066105/76‑1 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAggg > 2:94436/1‑76 (MQ=255) atgaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAAACCCATACGCGCTAAC‑TTAAggg > 2:38259/1‑76 (MQ=255) atgaCCGGTTTATCCCCCCTGGCGCGGGGGAAACCCCGAACGGGGGGG‑GAAAAACCCCTCAGCGCTAAC‑TTAAagg > 2:816919/1‑76 (MQ=255) gaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGtt < 2:366536/76‑1 (MQ=255) gaCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGtt > 2:1055296/1‑76 (MQ=255) aCCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTtg < 2:546552/76‑1 (MQ=255) ccGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTtgt < 1:794740/76‑1 (MQ=255) ccGGTTTATCCCCGCGGGCGCGTGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTtgt < 2:41158/76‑1 (MQ=255) ccGGTTTATCCCCCCCGGCGCGGGGGACACCCCGAACGGGGGGG‑GAAAAACCCCTAAGCGCCAACTTTAAGGGtgt > 2:471753/1‑74 (MQ=16) ggTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTgg < 2:460460/76‑1 (MQ=255) tttATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAATGGTTGTGGTa < 1:1111082/76‑1 (MQ=255) ttACCCCCGCGGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTAt < 1:575870/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATCAGAGCTAAC‑TTAANGGTTGTGGTaatc > 1:150989/1‑73 (MQ=38) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTa > 2:815020/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTa < 1:123940/76‑1 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTAc < 1:1055655/76‑1 (MQ=255) cccccGCGGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTAc < 1:426000/75‑1 (MQ=255) cccGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑GAAAACCCCATAAGCGCTAAC‑TTAAGGGGTGTGGGATTACGc > 2:749415/1‑76 (MQ=25) cccGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGc > 2:253688/1‑76 (MQ=255) tGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGat < 1:750134/76‑1 (MQ=255) cgGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:624483/1‑76 (MQ=255) cgGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:943045/1‑76 (MQ=255) ggggAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑ATAAGGGTTGTGGTATTACGCCTGATATGAtt > 2:196927/1‑76 (MQ=255) cTGAACGGTGGGG‑AAAAACCCCATATGCGCTCAC‑TTAAGCNNTGTGGTATTANNCCTGATATGATTTACCGTGCCg > 1:1090732/1‑76 (MQ=17) tGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa > 1:378011/1‑76 (MQ=255) gAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt > 2:1170128/1‑76 (MQ=255) cGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa < 1:848670/76‑1 (MQ=255) ggTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt < 1:658670/76‑1 (MQ=255) tGGGG‑AAAAACCCCATAAGCGCTCAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:1039030/76‑1 (MQ=255) tGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:387236/76‑1 (MQ=40) gg‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc < 2:782749/76‑1 (MQ=35) gg‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc < 1:304231/76‑1 (MQ=35) g‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct > 2:623662/1‑76 (MQ=34) aaaaaCCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc > 1:1164582/1‑76 (MQ=32) | GAAATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGG‑AAAAACCCCATAAGCGCTAAC‑TTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTC > REL606/2772781‑2772923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |