| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 70 [0] | [1] 70 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 0 (0.000) | 43 (1.350) | 27/104 | 0.1 | 98.9% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 1 (0.030) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCC > REL606/2100232‑2100381 | tAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT > 2:1394623‑M1/1‑76 (MQ=255)tAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT < 1:1399294‑M1/76‑1 (MQ=255) aTAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgca > 2:715913‑M1/1‑70 (MQ=255) aTAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgca > 2:156883‑M1/1‑70 (MQ=255) tAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcat > 2:119913‑M1/1‑69 (MQ=255) tAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcat > 1:1524801‑M1/1‑69 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcata < 1:535107‑M1/76‑9 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcata < 2:1174551‑M1/76‑9 (MQ=255) tGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcc < 1:15602‑M1/76‑13 (MQ=255) gCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccc < 1:668648‑M1/76‑14 (MQ=255) cTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccct < 2:519799‑M1/76‑15 (MQ=255) cTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcccg < 1:1407295‑M1/76‑15 (MQ=255) tAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcccta < 2:363115‑M1/76‑16 (MQ=255) aGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctat > 1:456154‑M1/1‑60 (MQ=255) aGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctat > 1:529127‑M1/1‑60 (MQ=255) aGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctat > 2:78253‑M1/1‑60 (MQ=255) gCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatc > 1:1272544‑M1/1‑59 (MQ=255) gCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatc < 1:528598‑M1/76‑18 (MQ=255) gTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctct < 1:1301275‑M1/76‑21 (MQ=255) tACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctg < 1:275820‑M1/76‑22 (MQ=255) aCCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctgg > 1:823003‑M1/1‑54 (MQ=255) ggAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaac < 2:1272544‑M1/76‑27 (MQ=255) ggAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaac < 1:1532129‑M1/76‑27 (MQ=255) gAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaacc < 2:586642‑M1/76‑28 (MQ=255) caccTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtct < 2:1059792‑M1/76‑32 (MQ=255) caccGCCTGAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatacataagccctatctctggtaaccgtct < 2:1059779‑M1/76‑32 (MQ=255) cctcctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttc < 2:420218‑M1/76‑34 (MQ=255) cctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccat > 2:857459‑M1/1‑40 (MQ=255) cctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccat > 2:614536‑M1/1‑40 (MQ=255) ttAGCCTTTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattg < 1:1213887‑M1/76‑39 (MQ=255) ttAGCCGTTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattg < 1:1213893‑M1/76‑39 (MQ=255) tAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattga > 1:144734‑M1/1‑37 (MQ=255) gtgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacat > 2:924785‑M1/1‑31 (MQ=255) gtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcg > 2:996962‑M1/1‑29 (MQ=255) gtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcg < 1:1487195‑M1/76‑48 (MQ=255) gtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcg < 1:236835‑M1/76‑48 (MQ=255) aaTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgat < 1:209693‑M1/76‑50 (MQ=255) aTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgata < 2:1002900‑M1/76‑51 (MQ=255) aTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgata < 1:78392‑M1/76‑51 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgataga < 1:101916‑M1/76‑53 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgataga < 1:693368‑M1/76‑53 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgataga > 2:491690‑M1/1‑24 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgataga < 1:1371061‑M1/76‑53 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgataga < 1:436306‑M1/76‑53 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgataga < 1:170658‑M1/76‑53 (MQ=255) tcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaa > 2:147830‑M1/1‑23 (MQ=255) tcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaa > 2:856531‑M1/1‑23 (MQ=255) cccTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaat < 1:119913‑M1/76‑55 (MQ=255) cccTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaat > 2:338371‑M1/1‑22 (MQ=255) cccTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtctaccattgaccacatcgatagaat > 2:137450‑M1/1‑22 (MQ=255) cacGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctcct > 2:1187463‑M1/1‑16 (MQ=255) cacGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctcct > 2:515235‑M1/1‑16 (MQ=255) acGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctcctt < 2:1369486‑M1/76‑62 (MQ=255) gggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcn < 1:1462507‑M1/76‑64 (MQ=255) gggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttca < 1:1201416‑M1/76‑64 (MQ=255) gggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttca < 1:932394‑M1/76‑64 (MQ=255) gggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttca < 1:1270403‑M1/76‑64 (MQ=255) ggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcat > 2:441382‑M1/1‑12 (MQ=255) ggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcat < 2:529127‑M1/76‑65 (MQ=255) ggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcat < 1:223546‑M1/76‑65 (MQ=255) gCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcata > 2:1025203‑M1/1‑11 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca > 2:549093‑M1/1‑8 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca > 2:269814‑M1/1‑8 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca > 2:615244‑M1/1‑8 (MQ=255) aTTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcac > 1:840625‑M1/1‑7 (MQ=255) tttttttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacg < 1:320305‑M1/76‑71 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc > 1:869096‑M1/1‑2 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc > 1:170959‑M1/1‑2 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc > 1:1328005‑M1/1‑2 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc > 1:1103969‑M1/1‑2 (MQ=255) | TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCC > REL606/2100232‑2100381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |