| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 70 [0] | [1] 70 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 0 (0.000) | 43 (1.350) | 27/104 | 0.1 | 98.9% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 1 (0.030) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
AAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCCT > REL606/2122383‑2122529 | aaaCCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGc < 2:1050960/76‑1 (MQ=255) ataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCa > 2:156883‑M2/71‑76 (MQ=255) ataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCa > 2:715913‑M2/71‑76 (MQ=255) taaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCAt > 2:119913‑M2/70‑76 (MQ=255) taaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCAt > 1:1524801‑M2/70‑76 (MQ=255) aaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATa < 2:1174551‑M2/8‑1 (MQ=255) aaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATa < 1:535107‑M2/8‑1 (MQ=255) tgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGcc < 1:15602‑M2/12‑1 (MQ=255) gctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGccc < 1:668648‑M2/13‑1 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAgcccg < 1:1407295‑M2/14‑2 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCt < 2:519799‑M2/14‑1 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa < 2:363115‑M2/15‑1 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt > 1:529127‑M2/61‑76 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt > 1:456154‑M2/61‑76 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt > 2:78253‑M2/61‑76 (MQ=255) gctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtc > 1:1272544‑M2/60‑76 (MQ=255) gctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtc < 1:528598‑M2/17‑1 (MQ=255) gtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATctct < 1:1301275‑M2/20‑1 (MQ=255) taccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTg < 1:275820‑M2/21‑1 (MQ=255) accaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTgg > 1:823003‑M2/55‑76 (MQ=255) ggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAc < 1:1532129‑M2/26‑1 (MQ=255) ggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAc < 2:1272544‑M2/26‑1 (MQ=255) gaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAcc < 2:586642‑M2/27‑1 (MQ=255) cacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCt < 2:1059792‑M2/31‑1 (MQ=255) caccgcctgagcctgtgtaatctcccttacacgggcttattttttTATACATAAGCCCTATCTCTGGTAACCGTCt < 2:1059779‑M2/31‑1 (MQ=255) cctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTc < 2:420218‑M2/33‑1 (MQ=255) ccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCAt > 2:614536‑M2/41‑76 (MQ=255) ccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCAt > 2:857459‑M2/41‑76 (MQ=255) ttagcctttgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg < 1:1213887‑M2/38‑1 (MQ=255) ttagccgttgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg < 1:1213893‑M2/38‑1 (MQ=255) tagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGa > 1:144734‑M2/38‑76 (MQ=255) gtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAt > 2:924785‑M2/32‑76 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCg > 2:996962‑M2/30‑76 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCg < 1:236835‑M2/47‑1 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCg < 1:1487195‑M2/47‑1 (MQ=255) aatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAt < 1:209693‑M2/49‑1 (MQ=255) atctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATa < 1:78392‑M2/50‑1 (MQ=255) atctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATa < 2:1002900‑M2/50‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:693368‑M2/52‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa > 2:491690‑M2/25‑76 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:101916‑M2/52‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:436306‑M2/52‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:170658‑M2/52‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:1371061‑M2/52‑1 (MQ=255) tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGaa > 2:147830‑M2/24‑76 (MQ=255) tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGaa > 2:856531‑M2/24‑76 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt < 1:119913‑M2/54‑1 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAt > 2:338371‑M2/23‑76 (MQ=255) cccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTACCATTGACCACATCGATAGAAt > 2:137450‑M2/23‑76 (MQ=255) cacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATcctcct > 2:1187463‑M2/17‑76 (MQ=255) cacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATcctcct > 2:515235‑M2/17‑76 (MQ=255) acgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCtt < 2:1369486‑M2/61‑1 (MQ=255) gggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTtcn < 1:1462507‑M2/63‑2 (MQ=255) gggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCa < 1:932394‑M2/63‑1 (MQ=255) gggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCa < 1:1201416‑M2/63‑1 (MQ=255) gggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCa < 1:1270403‑M2/63‑1 (MQ=255) ggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCAt > 2:441382‑M2/13‑76 (MQ=255) ggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCAt < 1:223546‑M2/64‑1 (MQ=255) ggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCAt < 2:529127‑M2/64‑1 (MQ=255) gcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATa > 2:1025203‑M2/12‑76 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa > 2:269814‑M2/9‑76 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa > 2:549093‑M2/9‑76 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa > 2:615244‑M2/9‑76 (MQ=255) attttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCAc > 1:840625‑M2/8‑76 (MQ=255) ttttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACg < 1:320305‑M2/70‑1 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 1:869096‑M2/3‑76 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 1:170959‑M2/3‑76 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 1:1328005‑M2/3‑76 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 1:1103969‑M2/3‑76 (MQ=255) tATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCCt > 1:1054463/1‑76 (MQ=255) | AAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCCT > REL606/2122383‑2122529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |