mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,875,483 | 0 | G | C | 35.9% | 95.3 / 56.5 | 64 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3582336 | 57 (1.600) | 4 (0.120) | 4/140 | 4.1 | 7.5% | coding (356/1224 nt) | yhiS | hypothetical protein |
| ? | REL606 | = 3582485 | 46 (1.390) | coding (505/1224 nt) | yhiS | hypothetical protein | |||||
| * | ? | REL606 | = 1600838 | 14 (0.390) | 4 (0.120) | 4/140 | 4.1 | 23.4% | coding (34/267 nt) | ydfK | predicted DNA‑binding transcriptional regulator |
| ? | REL606 | = 1600968 | NA (NA) | coding (164/267 nt) | ydfK | predicted DNA‑binding transcriptional regulator | |||||
| * | ? | REL606 | 1425700 = | NA (NA) | 4 (0.120) | 4/140 | 4.1 | 21.1% | coding (164/267 nt) | ynaE | predicted DNA‑binding transcriptional regulator |
| ? | REL606 | 1425830 = | 16 (0.450) | coding (34/267 nt) | ynaE | predicted DNA‑binding transcriptional regulator | |||||
| * | ? | REL606 | 1409723 = | 29 (0.810) | 3 (0.090) | 3/136 | 4.5 | 7.4% | coding (683/1236 nt) | intR | integrase |
| ? | REL606 | 1409844 = | 49 (1.520) | coding (562/1236 nt) | intR | integrase | |||||
| * | ? | REL606 | 3738303 = | 54 (1.520) | 4 (0.120) | 3/138 | 4.6 | 6.6% | coding (553/984 nt) | waaV | putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738429 = | 64 (1.960) | coding (427/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| * | ? | REL606 | 1415725 = | 28 (0.790) | 3 (0.090) | 3/142 | 4.7 | 8.2% | intergenic (‑326/‑116) | kil/sieB | inhibitor of ftsZ, killing protein/phage superinfection exclusion protein |
| ? | REL606 | 1415895 = | 41 (1.220) | coding (55/489 nt) | sieB | phage superinfection exclusion protein | |||||