| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893611–3894994 | 3901930 | 6937–8320 | 21 [20] | [0] 70 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 67 (1.160) | 51/146 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1148109/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1148133/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:741535/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1826582/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1766163/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:150351/76‑1GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 1:144458/1‑76GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGCGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:1034427/76‑1 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 2:959694/1‑76 GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:1426824/1‑76 TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG < 2:1226564/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTTCACCTTTTTGGGGTCAGTACAGGTT > 2:1802781/1‑76 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 1:914032/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 1:1717287/1‑76 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 1:449320/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 2:1390997/1‑76 TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC > 2:904508/1‑76 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCACCTTTTTGGGGTCAGTACAGGTTGCCC > 2:1799310/1‑76 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 2:199785/76‑1 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 1:99111/76‑1 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 2:1777179/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA < 2:682063/76‑1 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA < 2:682046/76‑1 ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGG > 2:391125/1‑76 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG > 2:649556/1‑76 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG > 1:580558/1‑76 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA < 1:611986/76‑1 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA > 2:845299/1‑76 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA > 1:190435/1‑76 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCGGTACAGGTTGCCCAGGTGACC < 1:462142/76‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 2:1755304/76‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 2:804488/76‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTCGGGTCAGTACAGGTTGCCCAGGTGACC > 2:335297/1‑76 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA < 1:561698/76‑1 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA > 1:1481404/1‑76 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG > 2:530651/1‑76 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC < 1:32148/76‑1 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 2:1254189/1‑76 ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:1609208/76‑1 ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 2:1434750/76‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 2:177635/76‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA < 1:980904/76‑1 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:1347270/76‑1 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 2:1763120/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGA < 1:502156/76‑1 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAA > 1:869189/1‑76 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 2:570877/1‑76 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT < 1:67586/76‑1 CGTGTTTAACTGTCCAAATTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTA > 2:1863471/1‑76 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAA > 2:1514825/1‑76 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAA < 2:1808777/76‑1 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT > 2:875837/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT > 2:1164692/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT > 2:283920/1‑76 ACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGC > 2:1078909/1‑76 TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCC < 2:1702933/76‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC > 2:894752/1‑76 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC < 2:826147/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 2:718333/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA > 2:456150/1‑76 CCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCAC > 1:219792/1‑76 AACTTTGTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCA < 2:1215414/76‑1 ACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGACAAGAACGGGGCCTAAAATTGGCCCCACCAG < 2:1789637/76‑1 CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGA < 1:267740/76‑1 TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC > 1:823639/1‑76 TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCC > 1:1013462/1‑76 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG > 2:663547/1‑76 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGG > 2:403793/1‑76 GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCA > 2:1351266/1‑76 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAT < 1:1440730/76‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATG > 2:1077367/1‑76 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGG < 2:36322/76‑1 AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCG < 2:1494792/76‑1 AGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCG < 1:783948/76‑1 GTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGA > 2:1067866/1‑76 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC < 1:458936/76‑1 ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA < 2:1293476/76‑1 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > 1:804903/1‑76 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > 2:1299157/1‑76 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA < 1:1164692/76‑1 GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652457‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA > REL606/3901931‑3902005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |