| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 4,163,094 | Δ3 bp | coding (2239‑2241/4029 nt) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4163094 | 4163096 | 3 | 54 [0] | [0] 55 | rpoB | DNA‑directed RNA polymerase subunit beta |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4163093 | 0 (0.000) | 54 (1.010) | 42/150 | 0.2 | 100% | coding (2238/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta |
| ? | REL606 | 4163097 = | 0 (0.000) | coding (2242/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta | |||||
TGTCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4163021‑4163093‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTCT > REL606/4163097‑4163171 TGTCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATC < 2:950730/76‑1 GTCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCG > 2:1030267/1‑76 CGTTCAGTACGTGGATGCTTCCCGTATCGCTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGAC < 2:292156/76‑1 TTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACAT > 1:89233/1‑76 TCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATC > 1:899270/1‑76 CAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCT < 1:429222/76‑1 CAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGAAATCGACATCT > 2:190190/1‑76 AGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTA > 1:404625/1‑76 TGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCT > 2:1580900/1‑76 ATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGAC > 1:620815/1‑76 ATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGAC < 1:1060440/76‑1 TGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACC < 1:1331593/76‑1 CGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACA < 2:1548577/76‑1 TATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACC > 2:792543/1‑76 TATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACC > 2:616868/1‑76 ATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCC > 1:342797/1‑76 ATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCC > 2:1337698/1‑76 CGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGT > 1:67174/1‑76 GTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTT > 1:1233402/1‑76 GTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTT < 2:899088/76‑1 TTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTC > 2:695701/1‑76 TATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCT > 1:1291712/1‑76 ATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTA > 2:1049343/1‑76 ATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTA < 1:12292/76‑1 AAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACC > 2:1074510/1‑76 AAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCA > 2:1203931/1‑76 AGTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAG < 1:696159/76‑1 GTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGGCCAAATACACCCGTTCTAACCAGA < 2:699627/76‑1 GTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGA < 2:699616/76‑1 GTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGA < 1:179742/76‑1 GTTAACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGA < 2:1650460/76‑1 TAACGAAGACGAGATGTATCCGGGTGACGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAAC > 2:1512761/1‑76 AACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACA < 2:1206142/76‑1 AACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACA > 1:1349772/1‑76 ACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACAC < 2:1380216/76‑1 ACGAAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACAC < 2:375990/76‑1 AAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTG < 2:801193/76‑1 AAGACGAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTG < 1:1545712/76‑1 GAGATGTATCCGGGTGAAGCGATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCA < 1:557088/76‑1 GAGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCA < 1:151737/76‑1 AGATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAA < 1:1497081/76‑1 ATGTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACC > 1:43480/1‑76 GTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAG > 1:495274/1‑76 GTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAG < 1:430011/76‑1 GTATCCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAG < 2:1299743/76‑1 CCGGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGC < 2:1129927/76‑1 GGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCG > 2:1607841/1‑76 GGGTGAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCG > 2:763664/1‑76 GAAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTG < 2:686506/76‑1 AAGCAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGT > 2:1349999/1‑76 CAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTC > 1:1269408/1‑76 CAATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTC > 1:1233467/1‑76 AATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTCT > 1:1621195/1‑76 AATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTCT > 1:814791/1‑76 TGTCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4163021‑4163093‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTCT > REL606/4163097‑4163171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |